View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_6 (Length: 464)
Name: NF11382_low_6
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 449
Target Start/End: Original strand, 37864383 - 37864824
Alignment:
| Q |
8 |
cacgttggattataaagaggaaggttggaggtgagggggtgaaatcaacgagtatggttcaggggtaagcttgtaatctagaccaggggcgaccaatagg |
107 |
Q |
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| T |
37864383 |
cacgttggattataaagaggaaggttggaggtgagggggcgaaatcaacgagtatggttcaggggtaagcttgtaatctagaccaggggcgaccaatagg |
37864482 |
T |
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| Q |
108 |
gcgtgcgagaggagtgaccacacaaggcactaaaattttaggggcaccaaattannnnnnnncttcgtagtgtatatatagtaaaatnnnnnnnntcata |
207 |
Q |
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| T |
37864483 |
gcgtgcgagaggagcgaccacacaagccactaaaattttaggggcaccaaattattttttt-cttcatagtgtatatatagtaaaataaaaaaaatcata |
37864581 |
T |
|
| Q |
208 |
caattaatataaaacatggtaattcttgcattagtctttgtttagtattgaaagacttgggtcattttctgatgaggacttaaa-ttatcttgaattagt |
306 |
Q |
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| T |
37864582 |
caattaatataaaacatggtaattcttgcattagtctttgtttagtattgaaagacttgggtcattttctgatgaggacttaaaattatcttgaattagt |
37864681 |
T |
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| Q |
307 |
cttgaaacttatttaaaacacggtaattcatatgatcttcaaggtgaaattcaatttgaagaattaaaagtcatttgagtgattttaacaattgaatcaa |
406 |
Q |
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| T |
37864682 |
cttgaaacttatttaaaacatggtaattcatatgatcttcatggtgaaattcaatttgaagaattaaaagtcattagagtgattttaacaattgaatcaa |
37864781 |
T |
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| Q |
407 |
aatcaagtttgatgatattgagttctgttcgaacatttaattg |
449 |
Q |
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| T |
37864782 |
aatcaagtttgatgatattgagttctgttcgaacatttaattg |
37864824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 306 - 432
Target Start/End: Original strand, 48229200 - 48229326
Alignment:
| Q |
306 |
tcttgaaacttatttaaaacacggtaattcatatgatcttcaaggtgaaattcaatttgaagaattaaaagtcatttgagtgattttaacaattgaatca |
405 |
Q |
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||||||||| || ||||||| | | |||| ||||||||| | ||||||||| ||||||| |||||||||||||| ||| |||||||| ||||||| |
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| T |
48229200 |
tcttgaaacatacctaaaacaagatgattcttatgatcttgacggtgaaattatatttgaataattaaaagtcattagagaagttttaacagatgaatca |
48229299 |
T |
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| Q |
406 |
aaatcaagtttgatgatattgagttct |
432 |
Q |
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|||| ||||| |||||||||| |||| |
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| T |
48229300 |
aaataaagttatatgatattgaattct |
48229326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 416
Target Start/End: Original strand, 15857356 - 15857456
Alignment:
| Q |
316 |
tatttaaaacacggtaattcatatgatcttcaaggtgaaattcaatttgaagaattaaaagtcatttgagtgattttaacaattgaatcaaaatcaagtt |
415 |
Q |
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| T |
15857356 |
tatttaaaacacaatgattcttataatcttgatggtaaaattctacttgaagaattaaaagtcattcaaaagattttaaatattgaatcaaaatcaagtt |
15857455 |
T |
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| Q |
416 |
t |
416 |
Q |
| |
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|
| T |
15857456 |
t |
15857456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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