View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_8 (Length: 441)
Name: NF11382_low_8
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 26427422 - 26427148
Alignment:
| Q |
18 |
agagaaaggagaaggaagataactgagaagacacaagagcttgggaagttggttcctggtggaccaaagatgaacacagcagagatgcttaatgctgctg |
117 |
Q |
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| T |
26427422 |
agagaaaggagaaggaagataactgagaagacacaagagcttgggaagttggttcctggtggaccaaagatgaacacagcagagatgcttaatgctgctg |
26427323 |
T |
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| Q |
118 |
ctaattatgtcaagtttcttcaagctcaagttggaatgcttcaacttatggaaacatttagcaaggtaattgnnnnnnnnnnnnnnnnnncgcaatattc |
217 |
Q |
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| T |
26427322 |
ctaattatgtcaagtttcttcaagctcaagttggaatgcttcaacttatggaaacatttagcaaggtaattgtttttgcttttttattttcgcaatattc |
26427223 |
T |
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| Q |
218 |
ttatattattagagctcatagttgaatttaattacttgttttgtgttcttaggtcttattaacactccaagtgaa |
292 |
Q |
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| T |
26427222 |
ttatattattagagctcatagttgaatttaattacttgttttgtgttcttaggtcttattaacactccaagtgaa |
26427148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 370 - 434
Target Start/End: Complemental strand, 26427070 - 26427006
Alignment:
| Q |
370 |
aatacctagagtgtgtttgttcattgcatatatatttggttactttgtgtgaagaccctttgctt |
434 |
Q |
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| T |
26427070 |
aatacctagagtgtgtttgttcattgcatatatatttggttactttgtgtgaagaccctttgctt |
26427006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 28009460 - 28009630
Alignment:
| Q |
19 |
gagaaaggagaaggaagataactgagaagacacaagagcttgggaagttggttcctggtggaccaaagatgaacacagcagagatgcttaatgctgctgc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28009460 |
gagaaaggagaaggaagataactgagaagacacaagagcttgggaagttggttcctggtggaccaaagatgaacacagcagagatgcttaatgctgctgc |
28009559 |
T |
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| Q |
119 |
taattatgtcaagtttcttcaagctcaagttggaatgcttcaacttatggaaacatttagcaaggtaattg |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28009560 |
taattatgtcaagtttcttcaagctcaagttggaatgcttcaacttatggaaacatttagcaaggtaattg |
28009630 |
T |
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