View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11382_low_9 (Length: 435)

Name: NF11382_low_9
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11382_low_9
NF11382_low_9
[»] chr6 (4 HSPs)
chr6 (1-419)||(34881476-34881894)
chr6 (120-178)||(26373087-26373145)
chr6 (122-154)||(5565469-5565501)
chr6 (121-161)||(5730193-5730233)
[»] chr7 (3 HSPs)
chr7 (78-156)||(32888962-32889040)
chr7 (122-200)||(24942477-24942555)
chr7 (78-106)||(8558818-8558846)
[»] chr5 (1 HSPs)
chr5 (120-190)||(42217639-42217709)
[»] chr4 (2 HSPs)
chr4 (124-198)||(13458792-13458866)
chr4 (120-184)||(13298527-13298591)
[»] chr3 (1 HSPs)
chr3 (141-190)||(21866574-21866623)


Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 34881894 - 34881476
Alignment:
Q  1 gaaacccggtaagacaaccctctttctgtgctatgtggcaatgttgtcaatcgcagaaagtgcgaaatatatatttattcaaattccgctatgctacaat 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34881894 gaaacccggttagacaaccctctttctgtgctatgtggcaatgttgtcaatcgcagaaagtgcgaaatatatatttattcaaattccactatgctacaat 34881795  T
Q  101 gttataaagctgcagtagacactatttgacaagacttcgtactaaatagcgtatcatggaatgatagtgatttgttcatattccactatgttatagtgct 200  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||    
T  34881794 gttataaagccgcagtagacactatttgacaagactttgtactaaatagcgtatcgtggaacgatagtgatttgttcatattccgctatgttatagtgct 34881695  T
Q  201 gttgtgtggtagtagccattttgaatttggtatcctaagagaaacatggctttattgatagaaattgttgctgctgtaggtcctcacggagtatactgta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34881694 gttgtgtggtagtagccattttgaatttggtatcctaagagaaacatggctttattgatagaaattgttgctgctgtaggtcctcacggagtatactgta 34881595  T
Q  301 caagacttaaatgtgaaccctaaactctcatttgaagataactcatttgatgtcatcactaatgtggtaagaatatctcttaatatattttaacttcggt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34881594 caagacttaaatgtgaaccctaaactctcatttgaagataactctttcgatgtcatcactaatgtggtaagaatatctcttaatatattttaacttcggt 34881495  T
Q  401 attggctgatatttgtatt 419  Q
    |||||||||||||||||||    
T  34881494 attggctgatatttgtatt 34881476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 26373145 - 26373087
Alignment:
Q  120 cactatttgacaagacttcgtactaaatagcgtatcatggaatgatagtgatttgttca 178  Q
    ||||||||||||| |||| ||||||||||||||||||  |||  ||||||| |||||||    
T  26373145 cactatttgacaacactttgtactaaatagcgtatcacagaacaatagtgagttgttca 26373087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 5565469 - 5565501
Alignment:
Q  122 ctatttgacaagacttcgtactaaatagcgtat 154  Q
    ||||||||||| |||||||||||||||||||||    
T  5565469 ctatttgacaacacttcgtactaaatagcgtat 5565501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 5730193 - 5730233
Alignment:
Q  121 actatttgacaagacttcgtactaaatagcgtatcatggaa 161  Q
    |||||||||||||| || |||||||||||| ||||||||||    
T  5730193 actatttgacaagattttgtactaaatagcatatcatggaa 5730233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 32889040 - 32888962
Alignment:
Q  78 ttcaaattccgctatgctacaatgttataaagctgcagtagacactatttgacaagacttcgtactaaatagcgtatca 156  Q
    |||||||||| ||||||||||  ||||||  || ||| ||| ||||||||||||| |||| |||||||||||| |||||    
T  32889040 ttcaaattccactatgctacagagttatagcgccgcaatagccactatttgacaatactttgtactaaatagcatatca 32888962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 24942555 - 24942477
Alignment:
Q  122 ctatttgacaagacttcgtactaaatagcgtatcatggaatgatagtgatttgttcatattccactatgttatagtgct 200  Q
    ||||||||||| | || ||||||| |||||||||||||||  |||| ||| |||||||||||   |||| |||||||||    
T  24942555 ctatttgacaacattttgtactaattagcgtatcatggaacaatagcgatctgttcatattctgttatgctatagtgct 24942477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 106
Target Start/End: Original strand, 8558818 - 8558846
Alignment:
Q  78 ttcaaattccgctatgctacaatgttata 106  Q
    |||||||||||||||||||||||||||||    
T  8558818 ttcaaattccgctatgctacaatgttata 8558846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 42217639 - 42217709
Alignment:
Q  120 cactatttgacaagacttcgtactaaatagcgtatcatggaatgatagtgatttgttcatattccactatg 190  Q
    |||||||| |||| | || ||||||| ||||||||||| | | || ||||||||||||| |||||||||||    
T  42217639 cactatttcacaatattttgtactaagtagcgtatcattggacgacagtgatttgttcaaattccactatg 42217709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 13458792 - 13458866
Alignment:
Q  124 atttgacaagacttcgtactaaatagcgtatcatggaatgatagtgatttgttcatattccactatgttatagtg 198  Q
    ||||||||| ||||  ||||||||||||||| | ||||  || |||||||||||| ||| ||||||| |||||||    
T  13458792 atttgacaacactttatactaaatagcgtattacggaacaatggtgatttgttcaaatttcactatgatatagtg 13458866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 13298591 - 13298527
Alignment:
Q  120 cactatttgacaagacttcgtactaaatagcgtatcatggaatgatagtgatttgttcatattcc 184  Q
    ||||||||||||  |||| |||||||||||| |||||  |||  ||||||||||||||| |||||    
T  13298591 cactatttgacagcactttgtactaaatagcatatcacagaacaatagtgatttgttcaaattcc 13298527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 21866623 - 21866574
Alignment:
Q  141 actaaatagcgtatcatggaatgatagtgatttgttcatattccactatg 190  Q
    ||||||||| |||||| ||||| ||||||||||||| ||||||| |||||    
T  21866623 actaaatagtgtatcacggaataatagtgatttgttaatattcccctatg 21866574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University