View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11383_high_9 (Length: 286)
Name: NF11383_high_9
Description: NF11383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11383_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 10 - 206
Target Start/End: Complemental strand, 37386407 - 37386210
Alignment:
| Q |
10 |
gcagagagagcttttttgagatccctttatgagcagtatgctgcttgggg-tgttgatcttggtaccaacatttatcatgtcattgacaagaatcataat |
108 |
Q |
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| T |
37386407 |
gcagggagagcttttttgagatccctttatgagcagtatgctgcttgggggtgttgatcttggtaccaacatttatcatgtcattgacaagaatcataat |
37386308 |
T |
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| Q |
109 |
gaatttaaataattcattttccatccttttcaaaaaactctattagtgattaaacttacaaagtattgaatattgattgatgatacattcacgtgtta |
206 |
Q |
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| T |
37386307 |
gaatttaaataattcattttccatccttttcaaaaaactctattagtgattaaacttacaaagtattgaatattgattgatgatacattcacgtgtta |
37386210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 37375319 - 37375387
Alignment:
| Q |
6 |
aggagcagagagagcttttttgagatccctttatgagcagtatgctgcttggggtgttgatcttggtac |
74 |
Q |
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| T |
37375319 |
aggagcagggagagcttttttgagatctcttcatgagcagtatgctgcttggggtgttgatcttggtac |
37375387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 37360518 - 37360570
Alignment:
| Q |
22 |
tttttgagatccctttatgagcagtatgctgcttggggtgttgatcttggtac |
74 |
Q |
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| T |
37360518 |
tttttgagatcccttcatgagcagtatgctgcttggggtgttgatcttggtac |
37360570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 37367544 - 37367492
Alignment:
| Q |
22 |
tttttgagatccctttatgagcagtatgctgcttggggtgttgatcttggtac |
74 |
Q |
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| T |
37367544 |
tttttgagatcccttcatgagcagtatgctgcttggggtgttgatcttggtac |
37367492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 37382658 - 37382726
Alignment:
| Q |
6 |
aggagcagagagagcttttttgagatccctttatgagcagtatgctgcttggggtgttgatcttggtac |
74 |
Q |
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| T |
37382658 |
aggagcaggaagagcttttttgagatctctttatgcacagtatgctgcttggggtgttgatcttggtac |
37382726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 37386133 - 37386085
Alignment:
| Q |
221 |
ctagtgaaagtagagatcgtatctattaaaaggaaagtatcctaaactc |
269 |
Q |
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| T |
37386133 |
ctagtgaaagtagagatcgtatctattaaaaggaaagtatcctaaactc |
37386085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 41229919 - 41229852
Alignment:
| Q |
10 |
gcagagagagcttttttgagatccctttatgagcagtatgctgcttggggtgttgatcttggtaccaa |
77 |
Q |
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| T |
41229919 |
gcagggagagcgtttttgagatccctttatgagcagtatgctgcttggggtgttgatcttggtaccaa |
41229852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 41229815 - 41229742
Alignment:
| Q |
101 |
atcataatgaatttaaataattcattttccatccttttcaaaaaactctattagtgattaaacttacaaagtattga |
177 |
Q |
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| T |
41229815 |
atcatgatgaatttaaataattgattt-ccattattttcaaac--ctctgtaagtgattaaacttacaaagtattga |
41229742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 39243869 - 39243921
Alignment:
| Q |
22 |
tttttgagatccctttatgagcagtatgctgcttggggtgttgatcttggtac |
74 |
Q |
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| T |
39243869 |
tttttgaggtccctttatgtgcagtatgctgaatggggtgttgattttggtac |
39243921 |
T |
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