View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11383_low_1 (Length: 722)
Name: NF11383_low_1
Description: NF11383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11383_low_1 |
 | |
|
| [»] chr4 (8 HSPs) |
| |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 349 - 722
Target Start/End: Complemental strand, 28607521 - 28607148
Alignment:
| Q |
349 |
tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgcatttttcta |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607521 |
tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgcatttttcta |
28607422 |
T |
|
| Q |
449 |
caaataggaaagctatgatatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttcaagtttc |
548 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607421 |
caaataggaaagctatggtatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttcaagtttc |
28607322 |
T |
|
| Q |
549 |
acactttgaataccatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaaggaa |
648 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607321 |
acactctgaatgtcatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaaggaa |
28607222 |
T |
|
| Q |
649 |
agcattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttga |
722 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28607221 |
agcatcgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttga |
28607148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 349 - 722
Target Start/End: Complemental strand, 28612283 - 28611910
Alignment:
| Q |
349 |
tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgcatttttcta |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28612283 |
tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgcatttttcta |
28612184 |
T |
|
| Q |
449 |
caaataggaaagctatgatatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttcaagtttc |
548 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28612183 |
caaataggaaagctatggtatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttcaagtttc |
28612084 |
T |
|
| Q |
549 |
acactttgaataccatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaaggaa |
648 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28612083 |
acactctgaatgtcatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaaggaa |
28611984 |
T |
|
| Q |
649 |
agcattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttga |
722 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28611983 |
agcatcgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttga |
28611910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 14177629 - 14177959
Alignment:
| Q |
17 |
gaagctatggttgcaataccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgtta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14177629 |
gaagctatggttgcaataccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgtagttggagttgtta |
14177728 |
T |
|
| Q |
117 |
gcaggtttctttccaatccgggaaaagaacattgggaagctgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttggagg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177729 |
gcaggtttctttccaatccgggaaaagaacactgggaagctgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttggagg |
14177828 |
T |
|
| Q |
217 |
atcagattcgattttgaaaggctacacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaagaattgtgtttacttttgcaggggga |
316 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14177829 |
atcaaattcgattttgaaaggctacacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcaggggga |
14177928 |
T |
|
| Q |
317 |
gctgtatcttggcaatctaaattgcaaaaat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14177929 |
gctgtatcttggcaatctaaattgcaaaaat |
14177959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 28608245 - 28607914
Alignment:
| Q |
17 |
gaagctatggttgcaataccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgtta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608245 |
gaagctatggttgcaataccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgtta |
28608146 |
T |
|
| Q |
117 |
gcaggtttctttccaatccgggaaaa-gaacattgggaagctgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttggag |
215 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608145 |
gcaggtttctttccaatccgggaaaaagaacattgggaagctgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttggag |
28608046 |
T |
|
| Q |
216 |
gatcagattcgattttgaaaggctacacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaagaattgtgtttacttttgcaggggg |
315 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28608045 |
gatcaaattcgattttgaaagcctacacagatgctgatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcaggggg |
28607946 |
T |
|
| Q |
316 |
agctgtatcttggcaatctaaattgcaaaaat |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28607945 |
agctgtatcttggcaatctaaattgcaaaaat |
28607914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 654 - 722
Target Start/End: Original strand, 14178646 - 14178714
Alignment:
| Q |
654 |
tgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttga |
722 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14178646 |
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttga |
14178714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 654 - 722
Target Start/End: Original strand, 14173892 - 14173960
Alignment:
| Q |
654 |
tgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttga |
722 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14173892 |
tgaagcagaagtgaaaatacaaagtttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttga |
14173960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 651 - 722
Target Start/End: Original strand, 11104424 - 11104492
Alignment:
| Q |
651 |
cattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttga |
722 |
Q |
| |
|
||||||||||||||| | |||||||||||||| |||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
11104424 |
cattgaagcagaagtca-aatacaaagcttctatgtg--tagaagtgtgtgagagaaaaaatagagtgttga |
11104492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 650 - 722
Target Start/End: Original strand, 44161538 - 44161609
Alignment:
| Q |
650 |
gcattgaagcagaagtgagaat-acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttga |
722 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||||||| ||| |||||||||| ||| ||||||||||||| |
|
|
| T |
44161538 |
gcatcgaagcagaagtgaaaaacacaaagcttctgtgtgt--agaggtgtgtgagaggaataatagagtgttga |
44161609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 12934359 - 12934689
Alignment:
| Q |
17 |
gaagctatggttgcaataccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgtta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934359 |
gaagctatggttgcaataccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgtta |
12934458 |
T |
|
| Q |
117 |
gcaggtttctttccaatccgggaaaagaacattgggaagctgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttggagg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934459 |
gcaggtttctttccaatccgggaaaagaacattgggaagctgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttggagg |
12934558 |
T |
|
| Q |
217 |
atcagattcgattttgaaaggctacacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaagaattgtgtttacttttgcaggggga |
316 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12934559 |
atcagattcgcttttgaaaggctacacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcaggggga |
12934658 |
T |
|
| Q |
317 |
gctgtatcttggcaatctaaattgcaaaaat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
12934659 |
gctgtatcttggcaatctaaattgcaaaaat |
12934689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 411 - 663
Target Start/End: Original strand, 17123887 - 17124139
Alignment:
| Q |
411 |
agtcttctacctatttaatgcaaggatgcatt--tttctacaaataggaaagctatgatatagcttacggtggagagacatggctaggcatagcttgctg |
508 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||| ||||||||| ||||||||||| || |||||| |
|
|
| T |
17123887 |
agtcttctatttatttaatgcaaggaagcattattttctacaaataggaaaactatagtatagcttaaggtggagaggcatggctaggcttatcttgctt |
17123986 |
T |
|
| Q |
509 |
tgcagaaaagtgtgaaggcttgcaattcatttcaagtttcacactttgaataccatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacgg |
608 |
Q |
| |
|
||||||||||||||| | |||||||||||| ||||||||||||||||||| |||||||||||||||||| | ||||||| || || ||||||||||| |
|
|
| T |
17123987 |
agcagaaaagtgtgaatgtttgcaattcattccaagtttcacactttgaatgttatgacttttggtgtaagaat-tgtgaactaattcaaactcttacgg |
17124085 |
T |
|
| Q |
609 |
ctcatttcccctataaatagaggcaatggaattgaaggaaagcattgaagcagaa |
663 |
Q |
| |
|
|| ||| | ||||||||||| |||||| | ||||||||||||| |||| |||| |
|
|
| T |
17124086 |
cttgttt-tcttataaatagagtcaatggcaatgaaggaaagcatcgaagtagaa |
17124139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 652 - 722
Target Start/End: Original strand, 12930629 - 12930699
Alignment:
| Q |
652 |
attgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttga |
722 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12930629 |
attgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttga |
12930699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 652 - 722
Target Start/End: Original strand, 12935375 - 12935445
Alignment:
| Q |
652 |
attgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttga |
722 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12935375 |
attgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttga |
12935445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 411 - 477
Target Start/End: Original strand, 17121733 - 17121801
Alignment:
| Q |
411 |
agtcttctacctatttaatgcaaggatgcatttt--tctacaaataggaaagctatgatatagcttacg |
477 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| |||||||||||||||| |||| |||||||||| |
|
|
| T |
17121733 |
agtcttctatgtatttaatgcaaggaagcatttttttctacaaataggaaagatatggcatagcttacg |
17121801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 12930336 - 12930390
Alignment:
| Q |
349 |
tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattg |
405 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
12930336 |
tggccccaccacgtgtgggttatgt--ccagccaaagacaattgctacaagcaattg |
12930390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 12935082 - 12935136
Alignment:
| Q |
349 |
tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattg |
405 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
12935082 |
tggccccaccacgtgtgggttatgt--ccagccaaagacaattgctacaagcaattg |
12935136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 15300146 - 15300475
Alignment:
| Q |
18 |
aagctatggttgcaataccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgttag |
117 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15300146 |
aagctatggctgaaataccttactcctcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgttag |
15300245 |
T |
|
| Q |
118 |
caggtttctttccaatccgggaaaagaacattgggaagctgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttggagga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15300246 |
caggtttctttccaatccgggaaaagaacattgggaagttgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttggagga |
15300345 |
T |
|
| Q |
218 |
tcagattcgattttgaaaggctacacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaagaattgtgtttacttttgcagggggag |
317 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||| |
|
|
| T |
15300346 |
tcagattcgattttgaaaggctacacatatgcggatatggcaggtgacctggatggtagaaagtctgcttcaggaattgtgtttgcttttgcagggtgag |
15300445 |
T |
|
| Q |
318 |
ctgtatcttggcaatctaaattgcaaaaat |
347 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |
|
|
| T |
15300446 |
ctatatcttggcaatctaaattgcaaaaat |
15300475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 564 - 722
Target Start/End: Complemental strand, 37040927 - 37040768
Alignment:
| Q |
564 |
tgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggct-catttcccctataaatagaggcaatggaattgaaggaaagcattgaagcaga |
662 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
37040927 |
tgacttttagtgtaagagtgtgtgaaccaaatccaactcttacggcttcatttctcttataaatagagacaatgatagtgaaggaaagcattgaagcaga |
37040828 |
T |
|
| Q |
663 |
agtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttga |
722 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37040827 |
agtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttga |
37040768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 6692665 - 6692801
Alignment:
| Q |
44 |
tcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgttagcaggtttctttccaatccgggaaaag |
143 |
Q |
| |
|
|||||| |||| ||||||||||| ||||||||||| || |||||||| |||| |||||||| |||||||||||||||||| | || ||||| || |||| |
|
|
| T |
6692665 |
tcagcaattggaagtttgatgtacgcaatggtttgtacaaggccagacattggccatgcagtgggagttgttagcaggtttatgtcaaatccaggtaaag |
6692764 |
T |
|
| Q |
144 |
aacattgggaagctgtgaagtggatcttgaggtatct |
180 |
Q |
| |
|
||||||||||| || || ||||| ||||||||||| |
|
|
| T |
6692765 |
ctcattgggaagcggttaaatggattttgaggtatct |
6692801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 646 - 715
Target Start/End: Original strand, 15302891 - 15302960
Alignment:
| Q |
646 |
gaaagcattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaataga |
715 |
Q |
| |
|
|||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15302891 |
gaaagcatcgaagcagaattgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagagcaaaaataga |
15302960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 33415736 - 33415690
Alignment:
| Q |
59 |
ttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagt |
105 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
33415736 |
ttgatgtatgcaatggtttgcactagaccagatatagctcatgcagt |
33415690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 349 - 649
Target Start/End: Original strand, 34906756 - 34907056
Alignment:
| Q |
349 |
tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgcatttttcta |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34906756 |
tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgaatttttcta |
34906855 |
T |
|
| Q |
449 |
caaataggaaagctatgatatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttcaagtttc |
548 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34906856 |
caaataggaaagctatggtatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttcaagtttc |
34906955 |
T |
|
| Q |
549 |
acactttgaataccatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaaggaa |
648 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
34906956 |
acactctgaatgtcatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatagaattgaaagaa |
34907055 |
T |
|
| Q |
649 |
a |
649 |
Q |
| |
|
| |
|
|
| T |
34907056 |
a |
34907056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 652 - 722
Target Start/End: Original strand, 34907092 - 34907162
Alignment:
| Q |
652 |
attgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttga |
722 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34907092 |
attgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttga |
34907162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 245; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 349 - 720
Target Start/End: Original strand, 8538835 - 8539204
Alignment:
| Q |
349 |
tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaa-ttgtaaatagtcttctacctatttaatgcaaggatgcatttttct |
447 |
Q |
| |
|
|||||||||||| |||||||| |||| |||||||||||||||||||| || ||| || ||| ||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
8538835 |
tggccccaccacatgtgggtactgtt-ccagccaaagacaattactataaataaattataactagtcttctactcatttaatgcaatgatgcatttttct |
8538933 |
T |
|
| Q |
448 |
acaaataggaaagctatgatatagcttacggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcatttcaagttt |
547 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8538934 |
acaaataggaaagctatggtatagcttaaggtggagagacatggctaggcatagcttgctgtgcagaaaagtgtgaaggcttgcaattcattccaagttt |
8539033 |
T |
|
| Q |
548 |
cacactttgaataccatgacttttggtgtaagagtgtgtgaaccaaatccaactcttacggctcatttcccctataaatagaggcaatggaattgaagga |
647 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||||| | ||||||||||| |||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8539034 |
cacactctgaatgtcatgacttttggtgtaagag-gtgtgaactatttccaactcttatggcttatttcccctataaatagaggc-atggaattgaagga |
8539131 |
T |
|
| Q |
648 |
aagcattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgtt |
720 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
8539132 |
aagcatcgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatatagtgtt |
8539204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 5e-67; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 349 - 494
Target Start/End: Original strand, 2308760 - 2308905
Alignment:
| Q |
349 |
tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgcatttttcta |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2308760 |
tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacctatttaatgcaaggatgtatttttcta |
2308859 |
T |
|
| Q |
449 |
caaataggaaagctatgatatagcttacggtggagagacatggcta |
494 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
2308860 |
taaataggaaaactatggtatagcttacggtggagagacatggcta |
2308905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 796156 - 796020
Alignment:
| Q |
44 |
tcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgttagcaggtttctttccaatccgggaaaag |
143 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||| || |||||||| |||| |||||||| |||||||||||||||||| | || ||||| || |||| |
|
|
| T |
796156 |
tcagcaattggaagtttgatgtatgcaatggtttgtacaaggccagacattggccatgcagtgggagttgttagcaggtttatgtcaaatccaggtaaag |
796057 |
T |
|
| Q |
144 |
aacattgggaagctgtgaagtggatcttgaggtatct |
180 |
Q |
| |
|
||||||||||| || || ||||| ||||||||||| |
|
|
| T |
796056 |
ctcattgggaagcggttaaatggattttgaggtatct |
796020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 8273632 - 8273768
Alignment:
| Q |
44 |
tcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgttagcaggtttctttccaatccgggaaaag |
143 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||| || |||||||| |||| |||||||| |||||||||||||||||| | || ||||| || |||| |
|
|
| T |
8273632 |
tcagcaattggaagtttgatgtatgcaatggtttgtacaaggccagacattggccatgcagtgggagttgttagcaggtttatgtcaaatccaggtaaag |
8273731 |
T |
|
| Q |
144 |
aacattgggaagctgtgaagtggatcttgaggtatct |
180 |
Q |
| |
|
||||||||||| || || ||||| ||||||||||| |
|
|
| T |
8273732 |
ctcattgggaagcggttaaatggattttgaggtatct |
8273768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 8e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 19944615 - 19944751
Alignment:
| Q |
44 |
tcagcagttgggagtttgatgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgttagcaggtttctttccaatccgggaaaag |
143 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||| || |||||||| |||| |||||||| |||||||||||||||||| | || ||||| || |||| |
|
|
| T |
19944615 |
tcagcaattggaagtttgatgtatgcaatggtttgtacaaggccagacattggccatgcagtgggagttgttagcaggtttatgtcaaatccaggtaaag |
19944714 |
T |
|
| Q |
144 |
aacattgggaagctgtgaagtggatcttgaggtatct |
180 |
Q |
| |
|
||||||||||| || || ||||| ||||||||||| |
|
|
| T |
19944715 |
ctcattgggaagcggttaaatggattttgaggtatct |
19944751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 646 - 722
Target Start/End: Complemental strand, 42911408 - 42911331
Alignment:
| Q |
646 |
gaaagcattgaagcagaagtgagaat-acaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttga |
722 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42911408 |
gaaagcatcgaagcagaagtgaaaaacacaaagcttctgtgtgtgtagaagtgtgtgagagaaaaaatagagtgttga |
42911331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 646 - 714
Target Start/End: Complemental strand, 29107291 - 29107223
Alignment:
| Q |
646 |
gaaagcattgaagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatag |
714 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||| ||| ||||||||||||||||| |||||||| |
|
|
| T |
29107291 |
gaaagcatcgaagcagaagtggaaatacaaagcttctctgtatgtagaagtgtgtgagagaaaaaatag |
29107223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 51298526 - 51298598
Alignment:
| Q |
349 |
tggccccaccacgtgtgggtattgtttccagccaaagacaattactacaagtaattgtaaatagtcttctacc |
421 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
51298526 |
tggccccaccacgtgtggctattgtttctggccaaaaacaattactacaagtaattgcaaatagttttctacc |
51298598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 656 - 722
Target Start/End: Original strand, 51302118 - 51302184
Alignment:
| Q |
656 |
aagcagaagtgagaatacaaagcttctgtgtgtgtagaagtgtgtgagaagaaaaatagagtgttga |
722 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||| || |||||||||||| |||| |
|
|
| T |
51302118 |
aagcataagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgtgaggaaaaatagagtattga |
51302184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 62 - 180
Target Start/End: Complemental strand, 54968513 - 54968395
Alignment:
| Q |
62 |
atgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgttagcaggtttctttccaatccgggaaaagaacattgggaagctgtga |
161 |
Q |
| |
|
||||| |||||||||||||| || ||||| |||||| |||| || |||||||| || || || || || ||||| |||||||| |||||| | ||||||| |
|
|
| T |
54968513 |
atgtacgcaatggtttgcacaagaccagacattgcttatgcggtaggagttgtgagtagattcctgtcgaatccaggaaaagagcattggaatgctgtga |
54968414 |
T |
|
| Q |
162 |
agtggatcttgaggtatct |
180 |
Q |
| |
|
| ||||| ||||||||||| |
|
|
| T |
54968413 |
aatggatattgaggtatct |
54968395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 180
Target Start/End: Original strand, 1634 - 1752
Alignment:
| Q |
62 |
atgtatgcaatggtttgcaccaggccagatattgctcatgcagttggagttgttagcaggtttctttccaatccgggaaaagaacattgggaagctgtga |
161 |
Q |
| |
|
||||| |||||||||||||| || ||||| |||||| |||| || |||||||| || || || || || ||||| |||||||| |||||| | | ||||| |
|
|
| T |
1634 |
atgtacgcaatggtttgcacaagaccagacattgcttatgcggtaggagttgtgagtagattcctgtcgaatccaggaaaagagcattggaatgatgtga |
1733 |
T |
|
| Q |
162 |
agtggatcttgaggtatct |
180 |
Q |
| |
|
| ||||| ||||||||||| |
|
|
| T |
1734 |
aatggatattgaggtatct |
1752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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