View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11383_low_14 (Length: 235)

Name: NF11383_low_14
Description: NF11383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11383_low_14
NF11383_low_14
[»] scaffold0856 (1 HSPs)
scaffold0856 (19-220)||(4719-4923)
[»] chr1 (4 HSPs)
chr1 (73-220)||(30272614-30272761)
chr1 (24-61)||(30272528-30272565)
chr1 (17-47)||(27402441-27402471)
chr1 (19-61)||(31141940-31141982)
[»] chr7 (9 HSPs)
chr7 (17-61)||(32087902-32087946)
chr7 (19-62)||(32093013-32093056)
chr7 (19-62)||(32096729-32096772)
chr7 (19-62)||(39478519-39478562)
chr7 (19-62)||(41706620-41706663)
chr7 (19-61)||(32089257-32089299)
chr7 (19-61)||(39128484-39128526)
chr7 (19-61)||(41812223-41812265)
chr7 (19-47)||(32089083-32089111)
[»] chr8 (1 HSPs)
chr8 (19-61)||(21634798-21634840)
[»] chr6 (1 HSPs)
chr6 (19-61)||(26217226-26217268)
[»] chr3 (3 HSPs)
chr3 (19-61)||(38044513-38044555)
chr3 (19-61)||(48838049-48838091)
chr3 (19-47)||(50152416-50152444)
[»] chr4 (1 HSPs)
chr4 (19-47)||(8763001-8763029)
[»] chr2 (1 HSPs)
chr2 (19-47)||(32271350-32271378)


Alignment Details
Target: scaffold0856 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 4923 - 4719
Alignment:
Q  19 caaggatgacacgcacaaatcgagaaatgacccaaattattttgtacnnnnnnngattcccttcgttggctgcagttattggcttcttttttcatcatc- 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||     
T  4923 caaggatgacacgcacaaatcgagaaatgacccaaattattttgtactttttttgattcccttcgttggctgcagttattggcttcttttttcatcatca 4824  T
Q  118 --ccatgtgcttcgctatgatgtttgaaaacaaacttgactggcttttcactaatcttactcatggatgcatagtgtctcactatcatatttttggttct 215  Q
      |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4823 tcccatgtgcttcgctatgatgttcgaaaacaaacttgactggcttttcactaatcttactcatggatgcatagtgtctcactatcatatttttggttct 4724  T
Q  216 ctgtg 220  Q
    |||||    
T  4723 ctgtg 4719  T

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Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 73 - 220
Target Start/End: Original strand, 30272614 - 30272761
Alignment:
Q  73 gattcccttcgttggctgcagttattggcttcttttttcatcatcccatgtgcttcgctatgatgtttgaaaacaaacttgactggcttttcactaatct 172  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30272614 gattcccttcgttggctgcggttattggcttcttttttcatcatcccatgagcttcgctatgatgtttgaaaacaaacttgactggcttttcactaatct 30272713  T
Q  173 tactcatggatgcatagtgtctcactatcatatttttggttctctgtg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30272714 tactcatggatgcatagtgtctcactatcatatttttggttctctgtg 30272761  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 30272528 - 30272565
Alignment:
Q  24 atgacacgcacaaatcgagaaatgacccaaattatttt 61  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30272528 atgacacgcacaaatcgagaaatgacccaaattatttt 30272565  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 27402471 - 27402441
Alignment:
Q  17 cacaaggatgacacgcacaaatcgagaaatg 47  Q
    |||||||||||||||||||||||||||||||    
T  27402471 cacaaggatgacacgcacaaatcgagaaatg 27402441  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 31141982 - 31141940
Alignment:
Q  19 caaggatgacacgcacaaatcgagaaatgacccaaattatttt 61  Q
    |||||||||||||||||||||||||||||  ||||||| ||||    
T  31141982 caaggatgacacgcacaaatcgagaaatggtccaaattttttt 31141940  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 32087946 - 32087902
Alignment:
Q  17 cacaaggatgacacgcacaaatcgagaaatgacccaaattatttt 61  Q
    |||||||||||||||||||||||||||||||  ||||||| ||||    
T  32087946 cacaaggatgacacgcacaaatcgagaaatggtccaaattttttt 32087902  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 32093056 - 32093013
Alignment:
Q  19 caaggatgacacgcacaaatcgagaaatgacccaaattattttg 62  Q
    |||||||||||||||||||||||||||||  ||||||| |||||    
T  32093056 caaggatgacacgcacaaatcgagaaatggtccaaatttttttg 32093013  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 32096772 - 32096729
Alignment:
Q  19 caaggatgacacgcacaaatcgagaaatgacccaaattattttg 62  Q
    |||||||||||||||||||||||||||||  ||||||| |||||    
T  32096772 caaggatgacacgcacaaatcgagaaatggtccaaatttttttg 32096729  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 39478519 - 39478562
Alignment:
Q  19 caaggatgacacgcacaaatcgagaaatgacccaaattattttg 62  Q
    |||||||||||||||||||||||||||||  ||||||| |||||    
T  39478519 caaggatgacacgcacaaatcgagaaatggtccaaatttttttg 39478562  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 41706663 - 41706620
Alignment:
Q  19 caaggatgacacgcacaaatcgagaaatgacccaaattattttg 62  Q
    |||||||||||||||||||||||||||||  ||||||| |||||    
T  41706663 caaggatgacacgcacaaatcgagaaatggtccaaatttttttg 41706620  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 32089299 - 32089257
Alignment:
Q  19 caaggatgacacgcacaaatcgagaaatgacccaaattatttt 61  Q
    |||||||||||||||||||||||||||||  ||||||| ||||    
T  32089299 caaggatgacacgcacaaatcgagaaatggtccaaattttttt 32089257  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 39128526 - 39128484
Alignment:
Q  19 caaggatgacacgcacaaatcgagaaatgacccaaattatttt 61  Q
    |||||||||||||||||||||||||||||  ||||||| ||||    
T  39128526 caaggatgacacgcacaaatcgagaaatggtccaaattttttt 39128484  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 41812223 - 41812265
Alignment:
Q  19 caaggatgacacgcacaaatcgagaaatgacccaaattatttt 61  Q
    |||||||||||||||||||||||||||||  ||||||| ||||    
T  41812223 caaggatgacacgcacaaatcgagaaatggtccaaattttttt 41812265  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 32089083 - 32089111
Alignment:
Q  19 caaggatgacacgcacaaatcgagaaatg 47  Q
    |||||||||||||||||||||||||||||    
T  32089083 caaggatgacacgcacaaatcgagaaatg 32089111  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 21634840 - 21634798
Alignment:
Q  19 caaggatgacacgcacaaatcgagaaatgacccaaattatttt 61  Q
    |||||||||||||||||||||||||||||  ||||||| ||||    
T  21634840 caaggatgacacgcacaaatcgagaaatggtccaaattttttt 21634798  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 26217268 - 26217226
Alignment:
Q  19 caaggatgacacgcacaaatcgagaaatgacccaaattatttt 61  Q
    |||||||||||||||||||||||||||||  ||||||| ||||    
T  26217268 caaggatgacacgcacaaatcgagaaatggtccaaattttttt 26217226  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 38044555 - 38044513
Alignment:
Q  19 caaggatgacacgcacaaatcgagaaatgacccaaattatttt 61  Q
    |||||||||||||||||||||||||||||  ||||||| ||||    
T  38044555 caaggatgacacgcacaaatcgagaaatggtccaaattttttt 38044513  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 48838049 - 48838091
Alignment:
Q  19 caaggatgacacgcacaaatcgagaaatgacccaaattatttt 61  Q
    |||||||||||||||||||||||||||||  ||||||| ||||    
T  48838049 caaggatgacacgcacaaatcgagaaatggtccaaattttttt 48838091  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 50152416 - 50152444
Alignment:
Q  19 caaggatgacacgcacaaatcgagaaatg 47  Q
    |||||||||||||||||||||||||||||    
T  50152416 caaggatgacacgcacaaatcgagaaatg 50152444  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 8763001 - 8763029
Alignment:
Q  19 caaggatgacacgcacaaatcgagaaatg 47  Q
    |||||||||||||||||||||||||||||    
T  8763001 caaggatgacacgcacaaatcgagaaatg 8763029  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 32271378 - 32271350
Alignment:
Q  19 caaggatgacacgcacaaatcgagaaatg 47  Q
    |||||||||||||||||||||||||||||    
T  32271378 caaggatgacacgcacaaatcgagaaatg 32271350  T

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