View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11383_low_5 (Length: 424)

Name: NF11383_low_5
Description: NF11383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11383_low_5
NF11383_low_5
[»] chr7 (13 HSPs)
chr7 (66-207)||(33382346-33382487)
chr7 (66-205)||(32745884-32746023)
chr7 (67-210)||(40474374-40474517)
chr7 (67-213)||(28681849-28681992)
chr7 (66-212)||(46400042-46400188)
chr7 (84-207)||(45920064-45920187)
chr7 (86-207)||(45067543-45067664)
chr7 (66-192)||(31845141-31845267)
chr7 (84-201)||(35086400-35086517)
chr7 (74-157)||(11353728-11353810)
chr7 (84-207)||(8550611-8550734)
chr7 (74-145)||(32030317-32030388)
chr7 (199-240)||(32747060-32747101)
[»] chr1 (14 HSPs)
chr1 (66-207)||(15649100-15649241)
chr1 (80-212)||(32132013-32132145)
chr1 (66-207)||(790094-790235)
chr1 (84-212)||(24186652-24186780)
chr1 (84-210)||(34387555-34387681)
chr1 (84-212)||(27842558-27842686)
chr1 (84-212)||(34393625-34393753)
chr1 (66-212)||(17305044-17305189)
chr1 (66-205)||(51236294-51236432)
chr1 (94-192)||(24918874-24918972)
chr1 (74-195)||(33376538-33376654)
chr1 (99-212)||(22871241-22871354)
chr1 (66-206)||(32000583-32000723)
chr1 (201-240)||(8066717-8066756)
[»] chr2 (7 HSPs)
chr2 (66-200)||(9623917-9624050)
chr2 (84-212)||(31365492-31365620)
chr2 (66-192)||(43177118-43177244)
chr2 (66-201)||(2153988-2154118)
chr2 (201-240)||(2152963-2153002)
chr2 (84-195)||(5270442-5270553)
chr2 (201-240)||(41193372-41193411)
[»] chr4 (18 HSPs)
chr4 (66-212)||(23516104-23516250)
chr4 (66-207)||(35653290-35653430)
chr4 (66-206)||(38935775-38935910)
chr4 (66-212)||(46171634-46171780)
chr4 (66-163)||(26463914-26464011)
chr4 (66-192)||(23393144-23393270)
chr4 (66-192)||(49706384-49706510)
chr4 (84-212)||(12389167-12389295)
chr4 (84-212)||(31879528-31879656)
chr4 (66-195)||(9117307-9117436)
chr4 (84-206)||(27510778-27510900)
chr4 (84-212)||(6582333-6582461)
chr4 (84-206)||(16048074-16048193)
chr4 (84-175)||(48995737-48995828)
chr4 (93-178)||(2736707-2736792)
chr4 (81-173)||(47996589-47996680)
chr4 (202-240)||(6583940-6583978)
chr4 (166-211)||(26460712-26460757)
[»] chr5 (9 HSPs)
chr5 (66-205)||(32955809-32955948)
chr5 (66-212)||(28747551-28747689)
chr5 (84-212)||(3523155-3523283)
chr5 (93-207)||(31069140-31069254)
chr5 (94-194)||(31508461-31508561)
chr5 (66-212)||(26818356-26818497)
chr5 (93-195)||(33062040-33062142)
chr5 (66-136)||(8465186-8465256)
chr5 (74-147)||(42545710-42545778)
[»] chr3 (21 HSPs)
chr3 (66-207)||(44773937-44774078)
chr3 (66-178)||(18021744-18021856)
chr3 (64-192)||(40292891-40293019)
chr3 (66-212)||(50309003-50309148)
chr3 (84-207)||(13857073-13857195)
chr3 (66-212)||(10222998-10223139)
chr3 (86-205)||(32863566-32863685)
chr3 (75-194)||(44416396-44416515)
chr3 (66-159)||(13840785-13840878)
chr3 (99-212)||(5938085-5938198)
chr3 (75-195)||(33639403-33639523)
chr3 (87-195)||(50303218-50303326)
chr3 (84-207)||(55325189-55325311)
chr3 (93-207)||(34122365-34122479)
chr3 (74-212)||(40929327-40929465)
chr3 (75-207)||(50328335-50328467)
chr3 (72-138)||(5293235-5293301)
chr3 (68-142)||(8600202-8600276)
chr3 (96-178)||(25639412-25639494)
chr3 (70-137)||(20254758-20254825)
chr3 (201-240)||(44772775-44772814)
[»] scaffold0488 (2 HSPs)
scaffold0488 (66-212)||(7364-7510)
scaffold0488 (201-249)||(6093-6142)
[»] chr8 (23 HSPs)
chr8 (66-212)||(19147544-19147690)
chr8 (315-414)||(33837403-33837501)
chr8 (84-212)||(33691658-33691786)
chr8 (84-212)||(10902988-10903116)
chr8 (66-192)||(4885470-4885596)
chr8 (74-206)||(26053596-26053728)
chr8 (66-192)||(21184068-21184194)
chr8 (122-212)||(17564448-17564538)
chr8 (85-207)||(42475672-42475789)
chr8 (109-205)||(19127329-19127425)
chr8 (75-178)||(10226777-10226881)
chr8 (84-195)||(40346963-40347074)
chr8 (66-206)||(14333949-14334078)
chr8 (69-190)||(40614641-40614762)
chr8 (84-148)||(27114944-27115008)
chr8 (75-139)||(33238103-33238167)
chr8 (201-263)||(10904464-10904527)
chr8 (97-156)||(28733984-28734043)
chr8 (94-139)||(13947149-13947194)
chr8 (84-207)||(15254947-15255070)
chr8 (201-240)||(33690399-33690438)
chr8 (205-240)||(36369864-36369899)
chr8 (136-212)||(8259099-8259175)
[»] chr6 (11 HSPs)
chr6 (66-179)||(27596507-27596620)
chr6 (84-212)||(17154294-17154422)
chr6 (84-212)||(33702565-33702688)
chr6 (84-207)||(23111312-23111435)
chr6 (84-201)||(29092773-29092890)
chr6 (84-213)||(12356342-12356471)
chr6 (84-192)||(29397942-29398049)
chr6 (74-157)||(8636143-8636226)
chr6 (201-263)||(27597388-27597451)
chr6 (86-206)||(1800909-1801029)
chr6 (204-240)||(33703832-33703868)
[»] scaffold0064 (1 HSPs)
scaffold0064 (84-212)||(54069-54197)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 66 - 207
Target Start/End: Original strand, 33382346 - 33382487
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||     
T  33382346 aaatatttgttttggttcggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttggttcagttcggttagcttcaaacttgaaacg 33382445  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggttcg 207  Q
     ||| ||||||||||||||||||||||||||||| |||||||    
T  33382446 attcggttcggttttcccgaaccatttcaaaattacggttcg 33382487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 66 - 205
Target Start/End: Complemental strand, 32746023 - 32745884
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||     
T  32746023 aaatatttgttttggttcggttcggtatggttaataggtaagtaaatggttagccaaaccataactttggttcagttcggttagctccaaacttaaaacg 32745924  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggtt 205  Q
    |||| ||||  |||| ||||||||||||||||||||||||    
T  32745923 gttcggttcaatttttccgaaccatttcaaaatttcggtt 32745884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 67 - 210
Target Start/End: Complemental strand, 40474517 - 40474374
Alignment:
Q  67 aatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacag 166  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||  ||| ||||||||    
T  40474517 aatatttgttttggttcggttcggtatggttaataagtaagcaaatggttaaccaaaccataactttggttcagttcggttagctcacaacctgaaacag 40474418  T
Q  167 ttcagttcggttttcccgaaccatttcaaaatttcggttcgatt 210  Q
    ||  ||| | |||||||||||||||||||||||||| |||||||    
T  40474417 tttggtttgattttcccgaaccatttcaaaatttcgattcgatt 40474374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 67 - 213
Target Start/End: Complemental strand, 28681992 - 28681849
Alignment:
Q  67 aatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacag 166  Q
    ||||||||||||||||| | |   || |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| |    
T  28681992 aatatttgttttggttcagct---tatggttaataggtaagcaaatggttaaccaaaccataactttggttcagttcggttagatccaaacttgaaacgg 28681896  T
Q  167 ttcagttcggttttcccgaaccatttcaaaatttcggttcgattcgt 213  Q
    ||||||||| ||||||| ||||||||||||||||| ||||| |||||    
T  28681895 ttcagttcgattttcccaaaccatttcaaaatttcagttcggttcgt 28681849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 46400188 - 46400042
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    |||||||||||||||||||| |||||  ||||||||||||||||||||||||||| |||||||| ||||||||| || |||||  ||||||||| ||||     
T  46400188 aaatatttgttttggttcggatcggtttggttaataggtaagcaaatggttaaccgaaccataactttggttcagtttggttacttccaaactttaaacg 46400089  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 212  Q
    |||| |||| ||||| |||||||||||||| | || |||||| ||||    
T  46400088 gttcggttcagtttttccgaaccatttcaacactttggttcggttcg 46400042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 45920064 - 45920187
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| ||||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||| ||||  ||| ||||||||    
T  45920064 ggttcggttcggttcataggtaagaaaacggttaacctaaccataactttggttcagttcggttagctccatacctgaaacggttcgattcagttttccc 45920163  T
Q  184 gaaccatttcaaaatttcggttcg 207  Q
    ||||||||||||||||||||||||    
T  45920164 gaaccatttcaaaatttcggttcg 45920187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 86 - 207
Target Start/End: Original strand, 45067543 - 45067664
Alignment:
Q  86 ttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccga 185  Q
    |||||| ||||| ||| ||||| ||| |||||||| |||||||| ||||||||| ||||||||||| || || |||||| |||| |||| ||||||||||    
T  45067543 ttcggttcggttcatatgtaagaaaacggttaaccgaaccataactttggttcagttcggttagctgcatacctgaaacggttcggttcagttttcccga 45067642  T
Q  186 accatttcaaaatttcggttcg 207  Q
    ||||||||||||||||||||||    
T  45067643 accatttcaaaatttcggttcg 45067664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 66 - 192
Target Start/End: Complemental strand, 31845267 - 31845141
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    |||||||||||||| |||||||| ||  ||||||||||||||||||||||||||| |||||||| ||||||||| || |||||  ||||||||| ||||     
T  31845267 aaatatttgttttgcttcggttcagtttggttaataggtaagcaaatggttaaccgaaccataactttggttcagtttggttacttccaaactttaaacg 31845168  T
Q  166 gttcagttcggttttcccgaaccattt 192  Q
    |||| ||||| || | ||||| |||||    
T  31845167 gttcggttcgattattccgaaacattt 31845141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 201
Target Start/End: Complemental strand, 35086517 - 35086400
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    ||||| || ||||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||| ||||| || |||||  |||| |||| ||||||||    
T  35086517 ggttcagttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttaactccatacctgaaatggttcggttcagttttccc 35086418  T
Q  184 gaaccatttcaaaatttc 201  Q
    ||||||||||||||||||    
T  35086417 gaaccatttcaaaatttc 35086400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 11353810 - 11353728
Alignment:
Q  74 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaac 157  Q
    |||||||||||||| ||| ||||||||||| ||||||| |||||||| |||||||| ||||||||| ||||||||| |||||||    
T  11353810 gttttggttcggtt-ggttcggttaataggcaagcaaacggttaaccgaaccataactttggttcagttcggttagttccaaac 11353728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 8550611 - 8550734
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    ||||||||  ||| |||||| || |||| |||||||| |||||||| ||||||||| ||||||||| | ||||| | |||| |||| |||||||| |  |    
T  8550611 ggttcggtttggtaaataggcaaacaaacggttaaccgaaccataactttggttcagttcggttagtttcaaaccttaaacggttcggttcggttatttc 8550710  T
Q  184 gaaccatttcaaaatttcggttcg 207  Q
     ||||||||||| | |||||||||    
T  8550711 aaaccatttcaacacttcggttcg 8550734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 32030317 - 32030388
Alignment:
Q  74 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcgg 145  Q
    ||||||||||||||||||  || ||||||||||||||| |||||| | |||||||| ||||||||| |||||    
T  32030317 gttttggttcggttcggtttggctaataggtaagcaaacggttaatcgaaccataactttggttcagttcgg 32030388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 32747060 - 32747101
Alignment:
Q  199 ttcggttcgattcgtgaactattataatggttcggttatttt 240  Q
    ||||||||| ||||||||| ||||||||||||||||||||||    
T  32747060 ttcggttcggttcgtgaaccattataatggttcggttatttt 32747101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 66 - 207
Target Start/End: Original strand, 15649100 - 15649241
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||| |||      
T  15649100 aaatatttgttttggttcggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttggttcagctcggttagctccaaacttaaaatg 15649199  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggttcg 207  Q
    |||| ||||| |||||||||||||||||||||||||||||||    
T  15649200 gttcggttcgattttcccgaaccatttcaaaatttcggttcg 15649241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 80 - 212
Target Start/End: Original strand, 32132013 - 32132145
Alignment:
Q  80 gttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttt 179  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| |||| ||||| |||    
T  32132013 gttcgattcggtatggttaataggtaagcaaatggttaaccaaaccataactttggctcaattcggttagttccaaacttgaaacggttcggttcgattt 32132112  T
Q  180 tcccgaaccatttcaaaatttcggttcgattcg 212  Q
    |||||||||| |||||||||| |||||| ||||    
T  32132113 tcccgaaccacttcaaaattttggttcggttcg 32132145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 790235 - 790094
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    ||||||| |||||||||||||||||| ||||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||| ||||| || ||||||     
T  790235 aaatattggttttggttcggttcggttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttaactccatacctgaaacg 790136  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggttcg 207  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  790135 gttcggttcgattttctcgaaccatttcaaaatttcggttcg 790094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 24186780 - 24186652
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| | ||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||| |||| |||||||||||||    
T  24186780 ggttcggttcagttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaacggttcggttcggttttccc 24186681  T
Q  184 gaaccatttcaaaatttcggttcgattcg 212  Q
    |||||||||||||||||||||||| ||||    
T  24186680 gaaccatttcaaaatttcggttcggttcg 24186652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 84 - 210
Target Start/End: Original strand, 34387555 - 34387681
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| | ||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||| |||| |||||||||||||    
T  34387555 ggttcggttcagttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaacggttcggttcggttttccc 34387654  T
Q  184 gaaccatttcaaaatttcggttcgatt 210  Q
     ||||||||||||||||||||||||||    
T  34387655 aaaccatttcaaaatttcggttcgatt 34387681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 27842558 - 27842686
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| | ||| ||| ||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||| |||| ||||| |||||||    
T  27842558 ggttcggttcagttcatacgtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaacggttcggttcgattttccc 27842657  T
Q  184 gaaccatttcaaaatttcggttcgattcg 212  Q
    |||||||||||||||||||||||| ||||    
T  27842658 gaaccatttcaaaatttcggttcggttcg 27842686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 34393753 - 34393625
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| | ||| ||| ||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||| |||| ||||| |||||||    
T  34393753 ggttcggttcagttcatacgtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaacggttcggttcgattttccc 34393654  T
Q  184 gaaccatttcaaaatttcggttcgattcg 212  Q
    |||||||||||||||||||||||| ||||    
T  34393653 gaaccatttcaaaatttcggttcggttcg 34393625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 17305044 - 17305189
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    ||||||| ||||||||||||||| || ||||| ||||||||| ||| |||||||| |||||||| ||||||||  ||||||||| | || || ||||||     
T  17305044 aaatattggttttggttcggttcagttcggttcataggtaagaaaacggttaaccgaaccataactttggttcggttcggttagttgcatacatgaaacg 17305143  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 212  Q
    |||| |||||||||| ||||||||||| |||||||||||||| ||||    
T  17305144 gttcggttcggtttt-ccgaaccattttaaaatttcggttcggttcg 17305189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 66 - 205
Target Start/End: Original strand, 51236294 - 51236432
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    |||||||  ||||||||||||||||| ||||| ||||||||| |||  ||||||| |||||||| ||||||||| || |||||| |||| || ||||||     
T  51236294 aaatattgattttggttcggttcggttcggttcataggtaagaaaacagttaaccgaaccataactttggttcagtttggttaggtccatacctgaaacg 51236393  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggtt 205  Q
    |||| |||||||||| | ||||||||||||||||| ||||    
T  51236394 gttcggttcggtttt-ctgaaccatttcaaaattttggtt 51236432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 24918874 - 24918972
Alignment:
Q  94 ggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccattt 192  Q
    |||||||||||||||||||||||||||||||||||| |||| |||| || |||||  ||||||||| |||| |||||||||  |||| |||||||||||    
T  24918874 ggttaataggtaagcaaatggttaaccaaaccataactttgattcagtttggttaattccaaactttaaacggttcagttcaatttttccgaaccattt 24918972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 33376654 - 33376538
Alignment:
Q  74 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagtt 173  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||| |||||     ||||||||||||  |||| ||||||  | |||||||||| ||    
T  33376654 gttttggttcggttcggttcggttaataggcaagcaaatgattaaccgaacca-----ttggttcaattcaattagttccaaaacttaaacagttcaatt 33376560  T
Q  174 cggttttcccgaaccatttcaa 195  Q
    ||||| | | ||||||||||||    
T  33376559 cggttattctgaaccatttcaa 33376538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 212
Target Start/End: Complemental strand, 22871354 - 22871241
Alignment:
Q  99 ataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccatttcaaaat 198  Q
    ||||||||| ||| |||||||| |||||||| ||||||||| ||  |||| ||| | || | |||| ||||  |||||||||||| |||||| |||||||    
T  22871354 ataggtaagaaaacggttaaccgaaccataactttggttcagtttagttaactctatacctaaaacggttcgattcggttttcccaaaccatatcaaaat 22871255  T
Q  199 ttcggttcgattcg 212  Q
    |||||||| |||||    
T  22871254 ttcggttcaattcg 22871241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 206
Target Start/End: Complemental strand, 32000723 - 32000583
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    |||||||  ||||||||||||| ||| |||||||||||||| |||||| |||| | |||||||| |||| |||| ||| | ||| ||||||  | ||||     
T  32000723 aaatattgattttggttcggtttggttcggttaataggtaaacaaatgattaatcgaaccataactttgattcagttcagatagttccaaatcttaaacg 32000624  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggttc 206  Q
    |||| |||| ||||| |  ||||||||||| | ||||||||    
T  32000623 gttcggttcagtttttctaaaccatttcaacaattcggttc 32000583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 8066717 - 8066756
Alignment:
Q  201 cggttcgattcgtgaactattataatggttcggttatttt 240  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  8066717 cggttcggttcgtgaaccattataatggttcggttatttt 8066756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 66 - 200
Target Start/End: Original strand, 9623917 - 9624050
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||     
T  9623917 aaatatttgttttggttcggttcgatatggttaataggtaagcaaatggttaaccaaaccataactttggttcaa-tcggttagctccaaacttaaaacg 9624015  T
Q  166 gttcagttcggttttcccgaaccatttcaaaattt 200  Q
    |||||||| ||||||||||||||||||||||||||    
T  9624016 gttcagtttggttttcccgaaccatttcaaaattt 9624050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 31365620 - 31365492
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| | ||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| ||||||||| |||| ||||| |||||||    
T  31365620 ggttcggttcagttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacttgaaacggttcggttcgattttccc 31365521  T
Q  184 gaaccatttcaaaatttcggttcgattcg 212  Q
     ||||||||||||||||||||||| ||||    
T  31365520 aaaccatttcaaaatttcggttcggttcg 31365492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 192
Target Start/End: Complemental strand, 43177244 - 43177118
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| || |||||| || | |||  ||||||||| ||||     
T  43177244 aaatatttattttggttcggtttggttcggttaataggtaagcaaatggttaaccgaaccataacttaggttcagtttgattacttccaaactttaaacg 43177145  T
Q  166 gttcagttcggttttcccgaaccattt 192  Q
    |||| |||| |||||||||||||||||    
T  43177144 gttcggttcagttttcccgaaccattt 43177118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 66 - 201
Target Start/End: Original strand, 2153988 - 2154118
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    |||||||||||||||||||||||| | |     ||||||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || | | ||     
T  2153988 aaatatttgttttggttcggttcgattc-----ataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctaacacg 2154082  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttc 201  Q
    |||| ||||||||||||| |||  ||||||||||||    
T  2154083 gttcggttcggttttcccaaactttttcaaaatttc 2154118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 2153002 - 2152963
Alignment:
Q  201 cggttcgattcgtgaactattataatggttcggttatttt 240  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  2153002 cggttcggttcgtgaaccattataatggttcggttatttt 2152963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 5270442 - 5270553
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    ||||||||  |||||||||  ||||||| ||||||   |||||||| ||||||| | ||| ||||| |||| || | ||||||||| |||| ||| | ||    
T  5270442 ggttcggtttggttaatagacaagcaaacggttaattgaaccataactttggtttagttcagttagttccataccttaaacagttcggttcagttattcc 5270541  T
Q  184 gaaccatttcaa 195  Q
    ||||||||||||    
T  5270542 gaaccatttcaa 5270553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 41193411 - 41193372
Alignment:
Q  201 cggttcgattcgtgaactattataatggttcggttatttt 240  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  41193411 cggttcggttcgtgaaccattataatggttcggttatttt 41193372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 23516250 - 23516104
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    ||||||||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||||| |||      
T  23516250 aaatatttgttttggttcgattcggtatggttaataggtaagaaaatgattaaccaaaccataactttggttcagttcggttagctccaaacttaaaatg 23516151  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 212  Q
    |||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  23516150 gttcggttcgattttcccgaaccatttcaaaatttcggttcggttcg 23516104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 66 - 207
Target Start/End: Original strand, 35653290 - 35653430
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||     
T  35653290 aaatatttgttttggtttggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttggttcagttcggatagctccaaacttgaaacg 35653389  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggttcg 207  Q
    ||||  ||||||||| || |||||||| ||||||||||||||    
T  35653390 gttcgattcggtttt-ccaaaccattttaaaatttcggttcg 35653430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 66 - 206
Target Start/End: Complemental strand, 38935910 - 38935775
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||     
T  38935910 aaatatttgttttggtttggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttggtttagttcagttagctccaaacttgaaacg 38935811  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggttc 206  Q
    |||||     ||||| |||||||||||||||||||||||||    
T  38935810 gttca-----gtttttccgaaccatttcaaaatttcggttc 38935775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 46171780 - 46171634
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    ||||||| |||||||||||||||||| || || | ||||||| ||| |||||||| || ||||| ||||||||| |||||||||||||| || | ||||     
T  46171780 aaatattggttttggttcggttcggttcgattcacaggtaagaaaacggttaaccgaaacataactttggttcagttcggttagctccatacctaaaacg 46171681  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 212  Q
    |||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  46171680 gttcggttcggttttcccaaaccatttcaaaatttcggttcggttcg 46171634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 26464011 - 26463914
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaa 163  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| |||||    
T  26464011 aaatatttgttttggttcggttcggtatgattaataggtaagcaaatggttaaccaaaccataactttggttcagtttggttagctccaaacatgaaa 26463914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 192
Target Start/End: Original strand, 23393144 - 23393270
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| || |||||| || |||||  || |||||| ||||     
T  23393144 aaatatttattttggttcggtttggttcggttaataggtaagcaaatggttaaccgaaccataacttaggttcagtttggttacttctaaactttaaacg 23393243  T
Q  166 gttcagttcggttttcccgaaccattt 192  Q
    |||| |||| |||||||||||||||||    
T  23393244 gttcggttcagttttcccgaaccattt 23393270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 192
Target Start/End: Original strand, 49706384 - 49706510
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| || |||| | || |||||  ||||||||| ||||     
T  49706384 aaatatttattttggttcggtttggttcggttaataggtaagcaaatggttaaccgaaccataacttaggtttagtttggttacttccaaactttaaacg 49706483  T
Q  166 gttcagttcggttttcccgaaccattt 192  Q
    |||| |||| |||||||||||||||||    
T  49706484 gttcggttcagttttcccgaaccattt 49706510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 12389295 - 12389167
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| ||||| ||||||||| |||  ||||||| |||||||| ||||||||| ||||||||||||||  | | ||||||||| ||||||||||||     
T  12389295 ggttcggttcggttcataggtaagaaaacagttaaccgaaccataactttggttcagttcggttagctccatgccttaaacagttcggttcggttttcct 12389196  T
Q  184 gaaccatttcaaaatttcggttcgattcg 212  Q
    |||| |||||||||||||  |||||||||    
T  12389195 gaactatttcaaaatttcaattcgattcg 12389167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 31879528 - 31879656
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| ||||| ||||||||| ||| |||||| | |||||||| ||||||||| |||||||||||| | ||||||||| |||| ||| | |||||||    
T  31879528 ggttcggttcggttcataggtaagaaaacggttaatcgaaccataactttggttcagttcggttagctctatacttgaaacggttcggtttgattttccc 31879627  T
Q  184 gaaccatttcaaaatttcggttcgattcg 212  Q
     ||||||||||||||||| ||||| ||||    
T  31879628 aaaccatttcaaaatttcagttcggttcg 31879656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 66 - 195
Target Start/End: Original strand, 9117307 - 9117436
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    |||||||||||||||||||| |||||  ||||| || |||| ||||||||||||| |||||||||||| ||||| || |||||  ||||||||| ||||     
T  9117307 aaatatttgttttggttcggatcggtttggttactaagtaaacaaatggttaaccgaaccataattttagttcagtttggttacttccaaactttaaacg 9117406  T
Q  166 gttcagttcggttttcccgaaccatttcaa 195  Q
    |||| |||| ||||| |||||| |||||||    
T  9117407 gttcggttcagtttttccgaactatttcaa 9117436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 84 - 206
Target Start/End: Complemental strand, 27510900 - 27510778
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| ||||||||||| ||||||| |||||||| |||||||| ||||||||| ||||||||| | ||||| | |||  |||| |||||||| | ||    
T  27510900 ggttcggttcggttaataggcaagcaaacggttaaccgaaccataactttggttcagttcggttagtttcaaaccttaaatggttcggttcggttattcc 27510801  T
Q  184 gaaccatttcaaaatttcggttc 206  Q
    |||||||||||| | ||||||||    
T  27510800 gaaccatttcaacacttcggttc 27510778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 6582461 - 6582333
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| ||||| ||||||| | ||| |||||||| ||| |||| ||||||||| |||||||||||| | || | |||| || | |||||||||||||    
T  6582461 ggttcggttcggttcataggtaggaaaacggttaaccgaactataactttggttcagttcggttagctctataccttaaacggtgcggttcggttttccc 6582362  T
Q  184 gaaccatttcaaaatttcggttcgattcg 212  Q
    ||| ||||||||||||| |||||| ||||    
T  6582361 gaatcatttcaaaattttggttcggttcg 6582333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 16048074 - 16048193
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta--gctccaaacttgaaacagttcagttcggttttc 181  Q
    |||| ||| ||||| ||||| ||| ||| || |||||||||||||| ||||||||||||||||||  |||||| |  |||||| ||||     |||||||    
T  16048074 ggtttggttcggttcataggcaaggaaacggataaccaaaccataactttggttcaattcggttatagctccataactgaaacggttc-----ggttttc 16048168  T
Q  182 ccgaaccatttcaaaatttcggttc 206  Q
    |||||||||||||||||||||||||    
T  16048169 ccgaaccatttcaaaatttcggttc 16048193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 48995828 - 48995737
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcg 175  Q
    |||| ||| ||||||||||| ||| |||||||||||| |||||||||||||||||| || |||||  ||||||| | |||| |||| |||||    
T  48995828 ggtttggttcggttaataggcaagaaaatggttaaccgaaccataattttggttcagtttggttaattccaaaccttaaacggttcggttcg 48995737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 2736792 - 2736707
Alignment:
Q  93 cggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggtt 178  Q
    ||||||||||| || ||||  ||||||| |||||||| ||||||||| ||||||||| ||||||  | |||| |||| ||||||||    
T  2736792 cggttaataggcaaacaaacagttaaccgaaccataactttggttcagttcggttagttccaaatcttaaacggttcggttcggtt 2736707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 173
Target Start/End: Complemental strand, 47996680 - 47996589
Alignment:
Q  81 ttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagtt 173  Q
    ||||||||||| ||||| ||||||||| |||| ||||||| ||||| || ||||||||| ||| ||||  ||||||| || ||| ||||||||    
T  47996680 ttcggttcggttcggttcataggtaagaaaattgttaaccgaacca-aactttggttcagttcagttaattccaaacctgtaactgttcagtt 47996589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 6583940 - 6583978
Alignment:
Q  202 ggttcgattcgtgaactattataatggttcggttatttt 240  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  6583940 ggttcggttcgtgaaccattataatggttcggttatttt 6583978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 26460757 - 26460712
Alignment:
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattc 211  Q
    |||| |||| |||||||| |||||||||||||||||| ||||||||    
T  26460757 gttcggttcagttttcccaaaccatttcaaaatttcgattcgattc 26460712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 66 - 205
Target Start/End: Complemental strand, 32955948 - 32955809
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| |||| ||||||||||||| ||| ||||||     
T  32955948 aaatatttgttttggttcggttcggtatggttaataggtaagcaaatgattaaccaaaccataactttgattcagttcggttagctcccaacctgaaacg 32955849  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggtt 205  Q
    |||| |||||||||| ||||||||||||||||||| ||||    
T  32955848 gttcggttcggtttttccgaaccatttcaaaattttggtt 32955809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 28747689 - 28747551
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||       |||||    
T  28747689 aaatatttgttttggttcggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttagttcagttcggttagctcc-------aaaca 28747597  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 212  Q
    ||||  ||| | ||||| |||||||||||||||||||||||||||||    
T  28747596 gttcgattc-gatttcctgaaccatttcaaaatttcggttcgattcg 28747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 3523283 - 3523155
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| | ||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||| |||  ||||| |||||||    
T  3523283 ggttcggttcagttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaacggtttggttcgattttccc 3523184  T
Q  184 gaaccatttcaaaatttcggttcgattcg 212  Q
    |||||||||||||||||||||||||||||    
T  3523183 gaaccatttcaaaatttcggttcgattcg 3523155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 93 - 207
Target Start/End: Complemental strand, 31069254 - 31069140
Alignment:
Q  93 cggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccattt 192  Q
    ||||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||  |||||||||| |||| |||||||||||    
T  31069254 cggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaatggttcagttcgatttttccgaaccattt 31069155  T
Q  193 caaaatttcggttcg 207  Q
    |||||||||||||||    
T  31069154 caaaatttcggttcg 31069140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 94 - 194
Target Start/End: Original strand, 31508461 - 31508561
Alignment:
Q  94 ggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccatttc 193  Q
    ||||||||||||||||||||||||||  |||||||| ||||||||| || |||||  ||||||||| |||||||||||||| ||||| ||||||||||||    
T  31508461 ggttaataggtaagcaaatggttaacagaaccataactttggttcagtttggttacttccaaactttaaacagttcagttcagtttttccgaaccatttc 31508560  T
Q  194 a 194  Q
    |    
T  31508561 a 31508561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 26818356 - 26818497
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    ||||||| |||||||||||||||| |  ||||  ||| |||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||      
T  26818356 aaatattggttttggttcggttcgatttggttcttagataagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaa-- 26818453  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 212  Q
       | ||||| |||||||||||||||||||||||| |||||| ||||    
T  26818454 ---cggttcgattttcccgaaccatttcaaaattttggttcggttcg 26818497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 195
Target Start/End: Original strand, 33062040 - 33062142
Alignment:
Q  93 cggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccattt 192  Q
    ||||||||||| |||||||  ||||||| |||||||||||||||||| ||||||||| | ||||  | |||| ||||||||||||| | ||||| |||||    
T  33062040 cggttaataggcaagcaaacagttaaccgaaccataattttggttcagttcggttagtttcaaatcttaaacggttcagttcggttattccgaaacattt 33062139  T
Q  193 caa 195  Q
    |||    
T  33062140 caa 33062142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 8465256 - 8465186
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggt 136  Q
    |||||||| |||| ||||||||||||  | |||||||||||||||| |||||||| || ||||| ||||||    
T  8465256 aaatatttattttagttcggttcggtttgattaataggtaagcaaacggttaaccgaatcataactttggt 8465186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 42545710 - 42545778
Alignment:
Q  74 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtt 147  Q
    ||||||||||||||     ||||||||| | ||||||| |||||||| |||||||| ||||||||| |||||||    
T  42545710 gttttggttcggtt-----cggttaatatgcaagcaaacggttaaccgaaccataactttggttcagttcggtt 42545778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 66 - 207
Target Start/End: Original strand, 44773937 - 44774078
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    |||||||| |||||||||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||||||| |||||||| |||||||||| |||      
T  44773937 aaatatttattttggttcggttcggtatggttaatagttaagcaaatggttaactaaaccataactttggttcagttcggttaactccaaacttaaaatt 44774036  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggttcg 207  Q
    |||| ||||||||||  |||||||||||||||||||||||||    
T  44774037 gttcggttcggtttttgcgaaccatttcaaaatttcggttcg 44774078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 66 - 178
Target Start/End: Original strand, 18021744 - 18021856
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||||||| ||| ||||     
T  18021744 aaatatttgttttggttcggttcggtatggttaataggtaaacaaatggttaaccaaaccataactttggttgagttcggttagctccaaccttaaaacg 18021843  T
Q  166 gttcagttcggtt 178  Q
    |||| ||||||||    
T  18021844 gttcggttcggtt 18021856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 40292891 - 40293019
Alignment:
Q  64 ataaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaa 163  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| || |||||| || |||||  ||||||||| |||    
T  40292891 ataaatatttattttggttcggtttggttcggttaataggtaagcaaatggttaaccgaaccataacttaggttcagtttggttacttccaaactttaaa 40292990  T
Q  164 cagttcagttcggttttcccgaaccattt 192  Q
    | |||| |||| |||||||||||||||||    
T  40292991 cggttcggttcagttttcccgaaccattt 40293019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 50309148 - 50309003
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    ||||||| | |||| ||||||||||| ||||| ||| ||||| ||| |||||||| || ||||| ||||||||| |||| ||||||||| || | ||||     
T  50309148 aaatattgggtttgattcggttcggttcggttcataagtaagaaaacggttaaccgaaacataactttggttcagttcgattagctccatacctaaaacg 50309049  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 212  Q
    |||| ||||||||||  ||||||||||||||||||||||||| ||||    
T  50309048 gttcggttcggtttt-tcgaaccatttcaaaatttcggttcggttcg 50309003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 13857195 - 13857073
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||| ||| ||||| ||||||||| ||| |||||||| |||||||| ||||||||| ||||||||| | || || |||||| |||| |||||||||| ||    
T  13857195 ggtttggttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagttgcatacctgaaacggttcggttcggtttt-cc 13857097  T
Q  184 gaaccatttcaaaatttcggttcg 207  Q
    ||||||||| ||||||||||||||    
T  13857096 gaaccattttaaaatttcggttcg 13857073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 10222998 - 10223139
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    ||||||| |||||||||||||||| |  ||||  ||| |||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||      
T  10222998 aaatattggttttggttcggttcgatttggttcttagataagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaa-- 10223095  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 212  Q
       | ||||| |||||||||||||||||||||||| |||||| ||||    
T  10223096 ---cggttcgattttcccgaaccatttcaaaattttggttcggttcg 10223139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 32863566 - 32863685
Alignment:
Q  86 ttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccga 185  Q
    |||||| |||||||||| || |||||||||||||| |||||||| ||||||||| ||||||||| ||||||| |  ||| |||| ||| |||| | ||||    
T  32863566 ttcggttcggttaatagatatgcaaatggttaaccgaaccataactttggttcagttcggttagttccaaaccttgaacggttcggtttggttattccga 32863665  T
Q  186 accatttcaaaatttcggtt 205  Q
    |||||||||| | |||||||    
T  32863666 accatttcaacacttcggtt 32863685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 44416396 - 44416515
Alignment:
Q  75 ttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttc 174  Q
    |||||||||||||||||  |||||||||||||| ||||||||||||||||||||  ||||||||| || | |||  |||| |||| |||  |||| ||||    
T  44416396 ttttggttcggttcggtttggttaataggtaagtaaatggttaaccaaaccatagctttggttcagtttgattacttccagactttaaatggttcggttc 44416495  T
Q  175 ggttttcccgaaccatttca 194  Q
     ||||| |||||||||||||    
T  44416496 agtttttccgaaccatttca 44416515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 66 - 159
Target Start/End: Complemental strand, 13840878 - 13840785
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaactt 159  Q
    |||||||||||||||||||| ||| |  ||||||||||||| ||||||||||||| |||||||| ||||||||| || |||||  |||||||||    
T  13840878 aaatatttgttttggttcggatcgatttggttaataggtaaacaaatggttaaccgaaccataactttggttcagtttggttatttccaaactt 13840785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 5938085 - 5938198
Alignment:
Q  99 ataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccatttcaaaat 198  Q
    ||||||||| ||| |||||||| |||||||| ||||||||| ||||  || |  || || |||||| |||| |||| ||||| |||||||||||||||||    
T  5938085 ataggtaagaaaacggttaaccgaaccataactttggttcagttcgtataccagcatacctgaaacggttcggttcagtttttccgaaccatttcaaaat 5938184  T
Q  199 ttcggttcgattcg 212  Q
    ||||||||| ||||    
T  5938185 ttcggttcggttcg 5938198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 33639403 - 33639523
Alignment:
Q  75 ttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttc 174  Q
    ||||||||||||||| | ||||||||||| ||||||| |||||| | |||||||| ||||||||| ||||||||  || |||| | |||| |||| | ||    
T  33639403 ttttggttcggttcgattcggttaatagggaagcaaacggttaatcgaaccataactttggttcatttcggttaattcaaaaccttaaacggttcggctc 33639502  T
Q  175 ggttttcccgaaccatttcaa 195  Q
    | || | ||||||||||||||    
T  33639503 gattattccgaaccatttcaa 33639523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 195
Target Start/End: Original strand, 50303218 - 50303326
Alignment:
Q  87 tcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaa 186  Q
    ||||| ||||||||||| ||||||| |||||||| || ||||| ||||||||| ||||| ||||| ||||| | |||| |||| |||||||| | || ||    
T  50303218 tcggttcggttaataggcaagcaaacggttaaccgaaacataactttggttcagttcggatagcttcaaaccttaaacggttcggttcggttattccaaa 50303317  T
Q  187 ccatttcaa 195  Q
    |||||||||    
T  50303318 ccatttcaa 50303326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 55325311 - 55325189
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| ||||||| ||| ||||||| |||||  | |||||||| ||||||||| || |||||| | ||||| | |||| ||||||||||||| | ||    
T  55325311 ggttcggttcggttaa-aggcaagcaaacggttagacgaaccataactttggttcagttaggttagtttcaaaccttaaacggttcagttcggttattcc 55325213  T
Q  184 gaaccatttcaaaatttcggttcg 207  Q
    |||||||||||| | |||||||||    
T  55325212 gaaccatttcaacacttcggttcg 55325189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 207
Target Start/End: Original strand, 34122365 - 34122479
Alignment:
Q  93 cggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccattt 192  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||| | ||||| ||| ||||||  | |||| |||  |||| ||||| |  ||||||||    
T  34122365 cggttaataggtaagcagatggttaaccaaaccataactttggttgagttcggatagttccaaatcttaaacggtttggttcagtttttctaaaccattt 34122464  T
Q  193 caaaatttcggttcg 207  Q
    ||| | |||||||||    
T  34122465 caacaattcggttcg 34122479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 212
Target Start/End: Complemental strand, 40929465 - 40929327
Alignment:
Q  74 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagtt 173  Q
    ||||| |||||||||||| | ||||| ||| | |||||  ||||||| |||||||| ||||||||| ||||||||| ||||||| | |||| ||||||||    
T  40929465 gttttagttcggttcggttcagttaacaggcacgcaaacagttaaccgaaccataactttggttcagttcggttagttccaaaccttaaacggttcagtt 40929366  T
Q  174 cggttttcccgaaccatttcaaaatttcggttcgattcg 212  Q
    || || | || ||| ||||||| | |||| |||| ||||    
T  40929365 cgattattccaaacgatttcaacacttcgattcggttcg 40929327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 207
Target Start/End: Original strand, 50328335 - 50328467
Alignment:
Q  75 ttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttc 174  Q
    ||||||||||||||||| ||||||  | || |  ||| |||||||| |||||||| ||||||||| ||| ||| | || |||  | |||| |||| ||||    
T  50328335 ttttggttcggttcggttcggttagcaagttacgaaacggttaaccgaaccataactttggttcagttcagttcgttctaaatcttaaacggttcggttc 50328434  T
Q  175 ggttttcccgaaccatttcaaaatttcggttcg 207  Q
    |||| | |||||||||||||| |||||||||||    
T  50328435 ggttattccgaaccatttcaacatttcggttcg 50328467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 5293301 - 5293235
Alignment:
Q  72 ttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttc 138  Q
    |||||||| ||||||| |||  ||||||||||||||||||||||||||| |||||||  ||||||||    
T  5293301 ttgttttgattcggtttggtttggttaataggtaagcaaatggttaaccgaaccatagctttggttc 5293235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 8600276 - 8600202
Alignment:
Q  68 atatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaatt 142  Q
    ||||||||||||||||||||| ||  | || ||||||||| ||||||||||||  ||||||| |||| |||||||    
T  8600276 atatttgttttggttcggttcagtttgattcataggtaagtaaatggttaaccgtaccataactttgattcaatt 8600202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 25639412 - 25639494
Alignment:
Q  96 ttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggtt 178  Q
    |||||| | |||||||||||||||| |||||||| ||||||||| ||||||||  | ||||| | |||| ||| |||||||||    
T  25639412 ttaataagcaagcaaatggttaaccgaaccataactttggttcagttcggttaatttcaaaccttaaacggtttagttcggtt 25639494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 20254758 - 20254825
Alignment:
Q  70 atttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggtt 137  Q
    |||||||||| ||||| |||||  | |||||||||| |||||||||||||| || ||||| |||||||    
T  20254758 atttgttttgattcggatcggtttgattaataggtatgcaaatggttaaccgaaacataactttggtt 20254825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 44772814 - 44772775
Alignment:
Q  201 cggttcgattcgtgaactattataatggttcggttatttt 240  Q
    ||||||| ||||||||||||||||||| ||||||||||||    
T  44772814 cggttcggttcgtgaactattataatgattcggttatttt 44772775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 7364 - 7510
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    ||||||| |||||||||||||||||| ||||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || ||||||     
T  7364 aaatattggttttggttcggttcggttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacgtgaaacg 7463  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 212  Q
    ||||  ||| |||||||||||||||||||||||||||||||| ||||    
T  7464 gttcgattcagttttcccgaaccatttcaaaatttcggttcggttcg 7510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 6142 - 6093
Alignment:
Q  201 cggttcgattcgtgaactattataatggttcggtta-ttttggttcagtt 249  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||||||||    
T  6142 cggttcggttcgtgaaccattataatggttcggttatttttggttcagtt 6093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 19147690 - 19147544
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    ||||||| ||||||||||||||||||  |||| ||||||||| |||||||||||| |||||||| ||||||||| |||||||||||||| || ||||||     
T  19147690 aaatattggttttggttcggttcggtttggttcataggtaagaaaatggttaaccgaaccataactttggttcagttcggttagctccatacctgaaacg 19147591  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 212  Q
    |||| |||| ||||||||||| |||||||||||||||||||| ||||    
T  19147590 gttcggttcagttttcccgaatcatttcaaaatttcggttcggttcg 19147544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 315 - 414
Target Start/End: Complemental strand, 33837501 - 33837403
Alignment:
Q  315 aaaggacgaacttacttttttggtagtttgttcttttaaaggtgggtcaccctagagccatttgattaaaaaatttgttctttaactttaatgacctatg 414  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33837501 aaaggacgaacttgcttttttggtagtttgttcttttaaaggtgggttaccctagagccatttgatta-aaaatttgttctttaactttaatgacctatg 33837403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 33691658 - 33691786
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| ||||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||| |||| |||||||||||||    
T  33691658 ggttcggttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaacggttcggttcggttttccc 33691757  T
Q  184 gaaccatttcaaaatttcggttcgattcg 212  Q
    ||||||||||||||||||| |||| ||||    
T  33691758 gaaccatttcaaaatttcgattcggttcg 33691786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 10903116 - 10902988
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||| | ||||| ||| ||||| ||| |||||||| |||||||| ||||||||| |||||||||||||| || |||||| |||| |||||||||||||    
T  10903116 ggttcgattcggttcatatgtaagaaaacggttaaccgaaccataactttggttcagttcggttagctccatacctgaaacggttcggttcggttttccc 10903017  T
Q  184 gaaccatttcaaaatttcggttcgattcg 212  Q
    |||||||||||||||||||||||| ||||    
T  10903016 gaaccatttcaaaatttcggttcggttcg 10902988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 192
Target Start/End: Original strand, 4885470 - 4885596
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| || |||||| || |||||  ||||||||| ||||     
T  4885470 aaatatttattttggttcggtttggttcggttaataggtaagcaaatggttaaccgaaccataacttaggttcagtttggttacttccaaactttaaacg 4885569  T
Q  166 gttcagttcggttttcccgaaccattt 192  Q
    |||| ||||  ||||||||||||||||    
T  4885570 gttcggttcaattttcccgaaccattt 4885596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 74 - 206
Target Start/End: Original strand, 26053596 - 26053728
Alignment:
Q  74 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagtt 173  Q
    ||||||||||||||||||  |||||||||| ||||||| |||||||| |||||||| ||||||||||||||||||| ||||||| | |||| |||| |||    
T  26053596 gttttggttcggttcggttaggttaataggcaagcaaacggttaaccgaaccataactttggttcaattcggttagttccaaaccttaaacggttcggtt 26053695  T
Q  174 cggttttcccgaaccatttcaaaatttcggttc 206  Q
    |  || | |||||||||||||| | ||||||||    
T  26053696 catttattccgaaccatttcaacacttcggttc 26053728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 66 - 192
Target Start/End: Original strand, 21184068 - 21184194
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    |||||||||||||||||||||| ||| ||||  ||| |||||||||||||||||| |||||||| ||||||||| || |||||  ||||||||| ||||     
T  21184068 aaatatttgttttggttcggtttggttcggtatataagtaagcaaatggttaaccgaaccataactttggttcagtttggttacttccaaactttaaacg 21184167  T
Q  166 gttcagttcggttttcccgaaccattt 192  Q
    |||| |||| ||||| |||||||||||    
T  21184168 gttcggttcagtttttccgaaccattt 21184194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 17564448 - 17564538
Alignment:
Q  122 aaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 212  Q
    |||||||| ||||||||| |||||||||||||| || |||||| |||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  17564448 aaccataactttggttcagttcggttagctccatacctgaaacggttcggttcgattttcccgaaccatttcaaaatttcggttcggttcg 17564538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 85 - 207
Target Start/End: Complemental strand, 42475789 - 42475672
Alignment:
Q  85 gttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccg 184  Q
    ||||||| ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| ||||||| | |||     | |||||||| | |||    
T  42475789 gttcggttcggttaataggtatgcaaatggttaaccgaaccataactttggttcaattcggttagttccaaaccttaaa-----cggttcggttattccg 42475695  T
Q  185 aaccatttcaaaatttcggttcg 207  Q
    ||||||||||||| |||||||||    
T  42475694 aaccatttcaaaacttcggttcg 42475672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 109 - 205
Target Start/End: Complemental strand, 19127425 - 19127329
Alignment:
Q  109 aaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccatttcaaaatttcggtt 205  Q
    |||||||||||| ||| | || ||||||||| |||||||||||||| || | |||| |||| |||||||||||||||| ||||||||||||||||||    
T  19127425 aaatggttaaccgaacaacaactttggttcagttcggttagctccatacctaaaacggttcggttcggttttcccgaatcatttcaaaatttcggtt 19127329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 75 - 178
Target Start/End: Complemental strand, 10226881 - 10226777
Alignment:
Q  75 ttttggttc-ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagtt 173  Q
    ||||||||| |||||||| ||||||||||| ||| ||| |||||||| |||||||||||||||||| ||||||||| ||||||| | |||| |||  |||    
T  10226881 ttttggttctggttcggttcggttaataggcaagaaaacggttaaccgaaccataattttggttcagttcggttagttccaaaccttaaacggtttggtt 10226782  T
Q  174 cggtt 178  Q
    |||||    
T  10226781 cggtt 10226777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 84 - 195
Target Start/End: Complemental strand, 40347074 - 40346963
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| ||||| ||||||||||||| |||||| |||| ||||| | ||||||| ||||||||| | ||||| | |||| |||  |||||||||||||    
T  40347074 ggttcggttcggttcataggtaagcaaacggttaatcaaatcataactctggttcagttcggttagtttcaaaccttaaacggtttggttcggttttccc 40346975  T
Q  184 gaaccatttcaa 195  Q
     |||||||||||    
T  40346974 taaccatttcaa 40346963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 206
Target Start/End: Complemental strand, 14334078 - 14333949
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    ||||||| ||||||||||||||||||       ||||||||| ||| |  ||||| |||||||| ||||||||| ||| |||||||||| || ||||||     
T  14334078 aaatattggttttggttcggttcggtc------ataggtaagaaaacgagtaaccgaaccataactttggttcagttcagttagctccatacctgaaacg 14333985  T
Q  166 gttcagttcggttttcccgaaccatttcaaaatttcggttc 206  Q
    ||||     ||||||| ||||||||||||||||||||||||    
T  14333984 gttc-----ggttttctcgaaccatttcaaaatttcggttc 14333949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 190
Target Start/End: Complemental strand, 40614762 - 40614641
Alignment:
Q  69 tatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagtt 168  Q
    |||||||| || ||| ||||| |  ||||||||| |||| |||||||||||| |||||||| ||||||||| || |||||  ||||||||| |||| |||    
T  40614762 tatttgttgtgattcagttcgatttggttaatagataagtaaatggttaaccgaaccataactttggttcagtttggttacttccaaactttaaacggtt 40614663  T
Q  169 cagttcggttttcccgaaccat 190  Q
    | ||||  |||| |||||||||    
T  40614662 cggttcaatttttccgaaccat 40614641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 27115008 - 27114944
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta 148  Q
    |||||||| ||||||||||| ||| |||||||||||| |||||||| ||||||||| ||||||||    
T  27115008 ggttcggttcggttaatagggaagtaaatggttaaccgaaccataactttggttcagttcggtta 27114944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 33238103 - 33238167
Alignment:
Q  75 ttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttca 139  Q
    ||||||||||||||||| ||||||||| | ||||||| |||||||  |||||||| |||||||||    
T  33238103 ttttggttcggttcggttcggttaatatgcaagcaaacggttaactgaaccataactttggttca 33238167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 10904464 - 10904527
Alignment:
Q  201 cggttcgattcgtgaactattataatggttcggtta-ttttggttcagtttgattcgcacggtt 263  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||||| ||||| ||||| |||||    
T  10904464 cggttcggttcgtgaaccattataatggttcggttatttttggttcggtttggttcgcgcggtt 10904527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 28733984 - 28734043
Alignment:
Q  97 taataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 156  Q
    ||||||| ||||||| ||||||||||||||||| ||||||| | ||||||||| ||||||    
T  28733984 taataggcaagcaaacggttaaccaaaccataactttggtttagttcggttagttccaaa 28734043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 13947194 - 13947149
Alignment:
Q  94 ggttaataggtaagcaaatggttaaccaaaccataattttggttca 139  Q
    |||||||| |||||||||||||||||| |||||||| |||||||||    
T  13947194 ggttaatatgtaagcaaatggttaaccgaaccataactttggttca 13947149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 15255070 - 15254947
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| ||||||||    ||||||| |||| ||| |||||||| ||||||||| ||||||||| | ||||| | |||  |||| |||| ||| | ||    
T  15255070 ggttcggttcggttaatgaccaagcaaacggttgaccgaaccataactttggttcagttcggttagtttcaaaccttaaatggttcggttcagttattcc 15254971  T
Q  184 gaaccatttcaaaatttcggttcg 207  Q
    ||||||||| || | |||||||||    
T  15254970 gaaccattttaacacttcggttcg 15254947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 33690438 - 33690399
Alignment:
Q  201 cggttcgattcgtgaactattataatggttcggttatttt 240  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  33690438 cggttcggttcgtgaaccattataatggttcggttatttt 33690399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 36369864 - 36369899
Alignment:
Q  205 tcgattcgtgaactattataatggttcggttatttt 240  Q
    ||||||||||| ||||||||||||||||||||||||    
T  36369864 tcgattcgtgatctattataatggttcggttatttt 36369899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 8259099 - 8259175
Alignment:
Q  136 ttcaattcggttagctccaaacttgaaacagttcagttcggttttcccgaaccatttcaaaatttcggttcgattcg 212  Q
    |||| ||||||||| ||||||| | |||| |||  ||||||||||| | ||||||||||||  || |||||||||||    
T  8259099 ttcagttcggttagttccaaaccttaaacggtttggttcggttttctcaaaccatttcaaatatttggttcgattcg 8259175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 66 - 179
Target Start/End: Complemental strand, 27596620 - 27596507
Alignment:
Q  66 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaaca 165  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||||||     
T  27596620 aaatatttgttttggttcggttcggtatggttaataggtaagcaaatggttaaccaaaccataattttggttcagttcggttagctgccaacatgaaacg 27596521  T
Q  166 gttcagttcggttt 179  Q
    |||| |||||||||    
T  27596520 gttcggttcggttt 27596507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 17154294 - 17154422
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| ||||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||| ||||| || |||||| |||  ||||||||||||     
T  17154294 ggttcggttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttaactccatacctgaaacggtttggttcggttttcct 17154393  T
Q  184 gaaccatttcaaaatttcggttcgattcg 212  Q
    |||||||||||||||||||||||| ||||    
T  17154394 gaaccatttcaaaatttcggttcggttcg 17154422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 33702688 - 33702565
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| |||||  |||||||| |||||||||||| |||||||| ||||||||| |||||||||||||| || |||||     | |||||||||||||    
T  33702688 ggttcggttcggttcttaggtaagaaaatggttaaccgaaccataactttggttcagttcggttagctccatacctgaaa-----cggttcggttttccc 33702594  T
Q  184 gaaccatttcaaaatttcggttcgattcg 212  Q
     ||||||||||||||||||||||| ||||    
T  33702593 aaaccatttcaaaatttcggttcggttcg 33702565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 23111435 - 23111312
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| ||||||||||  ||||||||| |||||| |||||||| |||| |||| ||||||||| ||||||| | |||| |||| |||||||| | ||    
T  23111435 ggttcggttcggttaatagacaagcaaatgattaaccgaaccataactttgattcagttcggttagttccaaacatcaaacggttcggttcggttattcc 23111336  T
Q  184 gaaccatttcaaaatttcggttcg 207  Q
    |||||||||||| | |||||||||    
T  23111335 gaaccatttcaacacttcggttcg 23111312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 84 - 201
Target Start/End: Original strand, 29092773 - 29092890
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    ||||||||  |||| |||| |||| ||| ||||| || |||||||| ||||||||| |||||||||||||| || |||||| |||| ||||| |||||||    
T  29092773 ggttcggtttggttcatagataagaaaacggttatccgaaccataactttggttcagttcggttagctccatacctgaaacggttcggttcgattttccc 29092872  T
Q  184 gaaccatttcaaaatttc 201  Q
    |||| |||||||||||||    
T  29092873 gaacgatttcaaaatttc 29092890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 84 - 213
Target Start/End: Original strand, 12356342 - 12356471
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| |||| |||||  |||||||  |||||||||||||||| ||||||||||||||||||  ||||||| | |||| |||| ||||||||   ||    
T  12356342 ggttcggttcggtcaatagccaagcaaactgttaaccaaaccataactttggttcaattcggttatttccaaaccttaaacggttcggttcggttactcc 12356441  T
Q  184 gaaccatttcaaaatttcggttcgattcgt 213  Q
    |||||||||||| | |||| |||| |||||    
T  12356442 gaaccatttcaacacttcgattcggttcgt 12356471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 29397942 - 29398049
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    ||||||||  ||||||||||||| ||||||||||||| |||||||| | | ||||| || |||||  ||||||||| ||||||||||||||  |||| ||    
T  29397942 ggttcggtttggttaataggtaaacaaatggttaaccgaaccataa-tgtcgttcagtttggttacttccaaactttaaacagttcagttcaatttttcc 29398040  T
Q  184 gaaccattt 192  Q
    |||||||||    
T  29398041 gaaccattt 29398049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 8636143 - 8636226
Alignment:
Q  74 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaac 157  Q
    ||||||||| ||||| || ||||||||||||||||||| |||||||| | |||||| |||||||||  |||||||| |||||||    
T  8636143 gttttggtttggttcagttcggttaataggtaagcaaacggttaaccgagccataactttggttcagctcggttagttccaaac 8636226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 27597388 - 27597451
Alignment:
Q  201 cggttcgattcgtgaactattataatggttcggtta-ttttggttcagtttgattcgcacggtt 263  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||||||||| | ||||| |||||    
T  27597388 cggttcggttcgtgaaccattataatggttcggttatttttggttcagttcggttcgcgcggtt 27597451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 206
Target Start/End: Original strand, 1800909 - 1801029
Alignment:
Q  86 ttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttcccga 185  Q
    |||||| ||||||||||| ||  ||| |||||||  ||| |||| ||||||||| |||| |||| ||||||| | |||||||||  |||| || | | ||    
T  1800909 ttcggttcggttaataggcaaataaacggttaactgaacgataactttggttcagttcgattagttccaaaccttaaacagttcgattcgattattctga 1801008  T
Q  186 accatttcaaaatttcggttc 206  Q
    ||||||| || ||||||||||    
T  1801009 accattttaacatttcggttc 1801029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 33703832 - 33703868
Alignment:
Q  204 ttcgattcgtgaactattataatggttcggttatttt 240  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  33703832 ttcggttcgtgaaccattataatggttcggttatttt 33703868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 54069 - 54197
Alignment:
Q  84 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaacttgaaacagttcagttcggttttccc 183  Q
    |||||||| ||||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||| ||||||| | | || |||| ||| |||| | |     
T  54069 ggttcggttcggttaataggtaagcaaacggttaaccgaaccataactttggttcagttcggttagttccaaaccttagacggttcggtttggttattct 54168  T
Q  184 gaaccatttcaaaatttcggttcgattcg 212  Q
    |||||||||||| | ||| |||| |||||    
T  54169 gaaccatttcaatacttcagttcaattcg 54197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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