View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11383_low_6 (Length: 388)
Name: NF11383_low_6
Description: NF11383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11383_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 32 - 375
Target Start/End: Original strand, 6366510 - 6366851
Alignment:
| Q |
32 |
atccttattttaactaccacacccttcggtcccaagctacaaaaaatccaccccttttattcccattctaattctagctagttctattaaaaactcccac |
131 |
Q |
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| T |
6366510 |
atccttattttaactaccacacccttcggtcccaagctacaaaaaatccaccccttttattcccattctaattctagctagttctattaaaaactcccac |
6366609 |
T |
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| Q |
132 |
ctcattgaacctaaatttaattttcaatataaacagacaaatcagatatatcaagcaacaaatgaaaaa-atggcatgccaacaacgtcaaattatagag |
230 |
Q |
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| T |
6366610 |
ct---tgaacctaaatttaattttccatataaacagacaaatcagatatatcaagcaacaaatgaaaaacatggcatgccaacaacgtcaaattatagag |
6366706 |
T |
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| Q |
231 |
caacaaaggaacgaggcagagatattcaagggggaagcaatatgcaagcaaaaatcacggcttctcctagacgaaatgttgcttccaagaggattgcttc |
330 |
Q |
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| T |
6366707 |
caacaaaggaatgaggcagagatattcaagggggaagcaatatgcaagcaaaaatcacggcttctcctagacgaaatgttgcttccaagaggattgcttc |
6366806 |
T |
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| Q |
331 |
ctttggacaacattgtggaaatgggtatcaaccgtgtcacaggtt |
375 |
Q |
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| T |
6366807 |
ctttggacaacattgtggaaatgggtatcaaccgtgtcacaggtt |
6366851 |
T |
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