View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11383_low_8 (Length: 298)

Name: NF11383_low_8
Description: NF11383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11383_low_8
NF11383_low_8
[»] chr7 (25 HSPs)
chr7 (97-280)||(49009922-49010105)
chr7 (12-92)||(8867371-8867451)
chr7 (12-92)||(40919661-40919741)
chr7 (12-92)||(43184108-43184188)
chr7 (12-90)||(34388720-34388798)
chr7 (12-92)||(7003172-7003252)
chr7 (12-92)||(7049043-7049123)
chr7 (13-92)||(36658626-36658705)
chr7 (12-92)||(3113760-3113840)
chr7 (12-92)||(5555911-5555991)
chr7 (12-92)||(26625193-26625272)
chr7 (28-92)||(33686010-33686074)
chr7 (20-92)||(14776753-14776825)
chr7 (12-90)||(11020669-11020747)
chr7 (20-98)||(49010175-49010253)
chr7 (12-93)||(20606071-20606152)
chr7 (12-92)||(8394574-8394654)
chr7 (20-92)||(36631265-36631337)
chr7 (12-68)||(38638022-38638078)
chr7 (12-94)||(13072500-13072582)
chr7 (12-93)||(20609364-20609445)
chr7 (12-93)||(20611853-20611934)
chr7 (20-90)||(32199136-32199206)
chr7 (55-92)||(33387046-33387083)
chr7 (56-88)||(45709965-45709997)
[»] scaffold0041 (1 HSPs)
scaffold0041 (12-92)||(53354-53434)
[»] chr8 (21 HSPs)
chr8 (12-92)||(34136441-34136521)
chr8 (12-92)||(4404455-4404535)
chr8 (20-92)||(16787673-16787745)
chr8 (12-92)||(23402555-23402635)
chr8 (12-92)||(2728833-2728913)
chr8 (12-92)||(9877667-9877747)
chr8 (11-92)||(29728019-29728100)
chr8 (12-82)||(7278480-7278550)
chr8 (28-92)||(378871-378935)
chr8 (12-92)||(3648432-3648512)
chr8 (12-92)||(15838734-15838814)
chr8 (20-92)||(40470189-40470261)
chr8 (12-92)||(42231384-42231464)
chr8 (20-92)||(39914963-39915035)
chr8 (13-67)||(36409020-36409074)
chr8 (27-92)||(19034-19099)
chr8 (26-92)||(9175581-9175647)
chr8 (28-82)||(15863282-15863336)
chr8 (49-94)||(29351807-29351852)
chr8 (12-93)||(32540104-32540185)
chr8 (56-92)||(3672291-3672327)
[»] chr4 (33 HSPs)
chr4 (12-92)||(3292536-3292616)
chr4 (12-92)||(43143224-43143304)
chr4 (12-92)||(6689875-6689955)
chr4 (12-92)||(35546400-35546480)
chr4 (12-90)||(13394881-13394959)
chr4 (12-92)||(42333414-42333495)
chr4 (12-92)||(28876954-28877034)
chr4 (12-92)||(50204717-50204797)
chr4 (12-90)||(33136084-33136162)
chr4 (15-92)||(40529464-40529541)
chr4 (12-92)||(6235957-6236037)
chr4 (12-92)||(25931157-25931237)
chr4 (12-92)||(48989776-48989856)
chr4 (12-92)||(17510871-17510951)
chr4 (12-92)||(36381985-36382065)
chr4 (12-92)||(29995622-29995703)
chr4 (12-92)||(30077275-30077356)
chr4 (20-92)||(20129762-20129834)
chr4 (20-92)||(26438925-26438997)
chr4 (20-92)||(34406930-34407002)
chr4 (20-92)||(43356353-43356425)
chr4 (20-92)||(47501222-47501294)
chr4 (12-92)||(48130425-48130505)
chr4 (12-92)||(10352523-10352604)
chr4 (12-93)||(29094594-29094675)
chr4 (23-92)||(30216394-30216462)
chr4 (13-92)||(1818164-1818244)
chr4 (20-92)||(13012637-13012709)
chr4 (20-92)||(30110410-30110482)
chr4 (28-93)||(9415345-9415410)
chr4 (53-92)||(26448499-26448538)
chr4 (26-93)||(4038358-4038425)
chr4 (51-93)||(31853673-31853715)
[»] chr2 (26 HSPs)
chr2 (12-92)||(12756477-12756557)
chr2 (12-92)||(45419030-45419110)
chr2 (12-92)||(8058972-8059052)
chr2 (12-92)||(31581259-31581339)
chr2 (15-92)||(44084244-44084321)
chr2 (12-92)||(2286237-2286317)
chr2 (12-92)||(35963139-35963219)
chr2 (15-90)||(32126830-32126905)
chr2 (20-90)||(4554840-4554910)
chr2 (12-90)||(7072174-7072252)
chr2 (15-92)||(17444682-17444759)
chr2 (12-92)||(2957784-2957864)
chr2 (20-92)||(6403450-6403522)
chr2 (12-92)||(18982038-18982118)
chr2 (12-92)||(21556543-21556623)
chr2 (20-92)||(41251280-41251352)
chr2 (26-92)||(26162356-26162422)
chr2 (12-90)||(26238390-26238468)
chr2 (12-93)||(37621701-37621782)
chr2 (20-92)||(42442433-42442505)
chr2 (20-87)||(18829309-18829376)
chr2 (27-86)||(26591496-26591555)
chr2 (26-92)||(816711-816777)
chr2 (26-92)||(15441838-15441904)
chr2 (59-92)||(8147799-8147832)
chr2 (53-93)||(3843994-3844034)
[»] chr1 (12 HSPs)
chr1 (12-90)||(35907977-35908055)
chr1 (12-92)||(17445741-17445821)
chr1 (12-92)||(11957989-11958069)
chr1 (12-92)||(42310579-42310659)
chr1 (13-91)||(28463396-28463474)
chr1 (15-92)||(33490153-33490230)
chr1 (12-92)||(3829430-3829509)
chr1 (12-92)||(7433869-7433949)
chr1 (12-92)||(41971897-41971977)
chr1 (12-91)||(23313443-23313522)
chr1 (12-92)||(32981695-32981775)
chr1 (41-93)||(9901662-9901712)
[»] chr6 (12 HSPs)
chr6 (12-92)||(28997177-28997257)
chr6 (12-90)||(34948421-34948499)
chr6 (12-92)||(33228975-33229056)
chr6 (20-92)||(399066-399138)
chr6 (12-92)||(13838245-13838325)
chr6 (39-92)||(18339541-18339594)
chr6 (20-92)||(29743731-29743804)
chr6 (12-93)||(10231747-10231828)
chr6 (29-98)||(28931450-28931519)
chr6 (55-93)||(12850063-12850101)
chr6 (53-98)||(4335203-4335248)
chr6 (53-93)||(12098436-12098476)
[»] chr5 (27 HSPs)
chr5 (12-92)||(12278496-12278576)
chr5 (12-92)||(17332259-17332339)
chr5 (12-92)||(31501358-31501438)
chr5 (12-92)||(31680814-31680894)
chr5 (12-92)||(33430768-33430848)
chr5 (12-93)||(38269049-38269130)
chr5 (24-90)||(37255054-37255120)
chr5 (12-93)||(192353-192434)
chr5 (12-92)||(1776014-1776094)
chr5 (12-92)||(10034351-10034431)
chr5 (12-92)||(13818426-13818506)
chr5 (12-92)||(16333539-16333619)
chr5 (12-92)||(39657169-39657249)
chr5 (15-92)||(39435145-39435222)
chr5 (12-92)||(15959585-15959665)
chr5 (20-90)||(26282964-26283034)
chr5 (15-92)||(36293262-36293339)
chr5 (41-93)||(30297621-30297673)
chr5 (12-92)||(36291818-36291898)
chr5 (28-83)||(23034262-23034317)
chr5 (28-87)||(23034427-23034486)
chr5 (12-67)||(43069329-43069384)
chr5 (44-92)||(31271854-31271902)
chr5 (53-92)||(16155446-16155485)
chr5 (31-93)||(11779220-11779282)
chr5 (28-98)||(35338308-35338378)
chr5 (12-93)||(20368490-20368571)
[»] chr3 (23 HSPs)
chr3 (12-92)||(6503209-6503289)
chr3 (12-92)||(45183428-45183508)
chr3 (12-92)||(5135735-5135815)
chr3 (12-92)||(6930533-6930613)
chr3 (12-92)||(33041400-33041479)
chr3 (20-98)||(38282857-38282935)
chr3 (12-92)||(34083758-34083838)
chr3 (12-92)||(40081379-40081459)
chr3 (15-92)||(19390595-19390672)
chr3 (20-92)||(6269072-6269144)
chr3 (20-92)||(22968090-22968162)
chr3 (20-92)||(39772239-39772311)
chr3 (12-92)||(19565140-19565221)
chr3 (20-92)||(27935624-27935695)
chr3 (12-62)||(11017909-11017959)
chr3 (12-92)||(45336320-45336401)
chr3 (12-98)||(38415448-38415534)
chr3 (12-88)||(29564794-29564868)
chr3 (12-92)||(8257275-8257355)
chr3 (10-93)||(19814764-19814847)
chr3 (12-93)||(35937668-35937749)
chr3 (56-98)||(40368673-40368715)
chr3 (26-87)||(27912456-27912517)
[»] scaffold0002 (1 HSPs)
scaffold0002 (20-92)||(480103-480175)
[»] scaffold0495 (1 HSPs)
scaffold0495 (12-93)||(8467-8548)
[»] scaffold0069 (1 HSPs)
scaffold0069 (15-87)||(18012-18084)
[»] scaffold0015 (1 HSPs)
scaffold0015 (56-92)||(2139-2175)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 97 - 280
Target Start/End: Complemental strand, 49010105 - 49009922
Alignment:
Q  97 atcttaaacatgtctagaaaacaaataattcaacctcgcctatcattgattaaagcagcgaataaaaaatcttggtctctagaaatttctttttgcaaac 196  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49010105 atcttaaacatgtctagaaaataaataattcaacctcgcctatcattgattaaagcagcgaataaaaaatcttggtctctagaaatttctttttgcaaac 49010006  T
Q  197 attcacatcttacaataaaacaatattgtacatagtatagtatagcatcatatttctctgaagacaatcaattgatggctctct 280  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49010005 attcatatcttacaataaaacaatattgtacatagtatagtatagcatcatatttctctgaagacaattaattgatggctctct 49009922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 8867371 - 8867451
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8867371 aagaaccttcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagaaattcataattatg 8867451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 40919661 - 40919741
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  40919661 aagaaccttcacagtgaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 40919741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 43184108 - 43184188
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  43184108 aagaaccttcacagtgaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 43184188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 34388720 - 34388798
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataatta 90  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  34388720 aagaaccttcacagtgaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaaattcataatta 34388798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 7003252 - 7003172
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||    
T  7003252 aagaaccttcacaatgaaattttgtagtctttaaacgatatacaaattaattataaattgtttaagaaattcataattatg 7003172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 7049123 - 7049043
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||    
T  7049123 aagaaccttcacaatgaaattttgtagtctttaaacgatatacaaattaattataaattgtttaagaaattcataattatg 7049043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 36658705 - 36658626
Alignment:
Q  13 agaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    |||||| ||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  36658705 agaaccttcacaataaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 36658626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 3113760 - 3113840
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  3113760 aagaaccttcacaatgaaattttgtaatttttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 3113840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 5555991 - 5555911
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  5555991 aagaaccttcacaatgaaattttgtaatttttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 5555911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 26625272 - 26625193
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||  |||||||||||||    
T  26625272 aagaaccttcacagtgaaattttgtagtctttaaatgagatacaaattaattataaattgttt-agagattcataattatg 26625193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 33686074 - 33686010
Alignment:
Q  28 aaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  33686074 aaattttgtagtttttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 33686010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 14776753 - 14776825
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| ||||||||||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  14776753 tcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 14776825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 11020669 - 11020747
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataatta 90  Q
    ||||||| |||||  ||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |||| |||||||    
T  11020669 aagaaccttcacaacgaaattttggagtttttaaacgagatacaaattaattataaattgtttaagaaatttataatta 11020747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 49010253 - 49010175
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatggaaaat 98  Q
    ||||| |||| ||||| | | ||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  49010253 tcacaatgaagttttgcaatttttaaacgagagacaaattaattataaattgtttaagaaattcataattatggaaaat 49010175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 20606152 - 20606071
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||||| ||||  |||||||||| ||| ||||||  ||||||||||||||||| ||||||||||| |||||||||||||||    
T  20606152 aagaaccttcaccatgaaattttgaagtttttaaatgagatacaaattaattatgaattgtttaagaaattcataattatgg 20606071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 8394654 - 8394574
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||  |||||||||||| | ||||||  ||||| ||||||||||||||||||||||| ||||||||||||||    
T  8394654 aagaaccttcacgatgaaattttgtaatttttaaatgagatataaattaattataaattgtttaagaaattcataattatg 8394574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 36631337 - 36631265
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| |||||||||||| | ||||||| |||||||| |||||||| ||||||||||| ||||||||||||||    
T  36631337 tcacaatgaaattttgtaatttttaaacgagatacaatttaattatcaattgtttaagaaattcataattatg 36631265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 38638022 - 38638078
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaa 68  Q
    ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  38638022 aagaaccttcacagtgaatttttgtagtctttaaacgagatacaaattaattataaa 38638078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 13072500 - 13072582
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatgga 94  Q
    ||||||| ||||  |||||||||| ||  ||||||| |||||| |||||||||| ||||||||||| ||||||||||||||||    
T  13072500 aagaaccttcaccatgaaattttggagattttaaacgagatactaattaattatgaattgtttaagaaattcataattatgga 13072582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 20609445 - 20609364
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||||| ||||  || ||||||| ||  ||||||  ||||||||||||||||| ||| ||||||| |||||||||||||||    
T  20609445 aagaaccttcaccatgcaattttgaagattttaaatgagatacaaattaattatgaatagtttaagaaattcataattatgg 20609364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 20611934 - 20611853
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||||| ||||  || ||||||| ||  ||||||  ||||||||||||||||| ||| ||||||| |||||||||||||||    
T  20611934 aagaaccttcaccatgcaattttgaagattttaaatgagatacaaattaattatgaatagtttaagaaattcataattatgg 20611853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 32199206 - 32199136
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataatta 90  Q
    |||| ||| |||||| |||| ||||||| ||| |||||||||||| |||||||||| | ||||| ||||||    
T  32199206 tcaccgtggaattttatagtttttaaacgagagacaaattaattaaaaattgtttatgaaattcttaatta 32199136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 33387083 - 33387046
Alignment:
Q  55 aaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  33387083 aaattaattatgaattgtttaagaaattcataattatg 33387046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 45709997 - 45709965
Alignment:
Q  56 aattaattataaattgtttaagtaattcataat 88  Q
    |||||||||||||||||||||||||||| ||||    
T  45709997 aattaattataaattgtttaagtaattcttaat 45709965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 53434 - 53354
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  53434 aagaaccttcacagtgaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 53354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 34136441 - 34136521
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  34136441 aagaaccttcacagtgaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 34136521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 4404535 - 4404455
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  4404535 aagaacctttacagtgaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 4404455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 16787673 - 16787745
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  16787673 tcacagtgaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 16787745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 23402635 - 23402555
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  23402635 aagaaccttcatagtgaaattttgtagtctttaaacaagatacaaattaattataagttgtttaagaaattcataattatg 23402555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 2728833 - 2728913
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  2728833 aagaaccttcacagtgaaattttatagtttttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 2728913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 9877747 - 9877667
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  9877747 aagaaccttcacaatgaaattttgtagtctttaaacgagatacaaattaattatgaattgtttaagaaattcataattatg 9877667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 29728019 - 29728100
Alignment:
Q  11 gaagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    |||||||| ||||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  29728019 gaagaaccttcacaatgaaattttgtaatttttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 29728100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 7278550 - 7278480
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaatt 82  Q
    ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  7278550 aagaaccttcacaatgaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaaatt 7278480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 378935 - 378871
Alignment:
Q  28 aaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  378935 aaattttgtagtttttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 378871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 3648432 - 3648512
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||| | ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||    
T  3648432 aagaaccttcacaatgaaattttgtaatttttaaacgagataaaaattaattataaattgtttaagaaattcataattatg 3648512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 15838814 - 15838734
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| | |||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  15838814 aagaaccttcacaataaaattttgtaatttttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 15838734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 40470189 - 40470261
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| |||||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||||||||||||    
T  40470189 tcacaatgaaattttgtagtttttaaatgagatacaaattaattataaattgtttaagaaattcataattatg 40470261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 42231464 - 42231384
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||  |||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  42231464 aagaaccttcacgatgaaattttgtaatttttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 42231384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 39915035 - 39914963
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| ||||||||||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  39915035 tcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 39914963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 36409074 - 36409020
Alignment:
Q  13 agaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataa 67  Q
    |||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||    
T  36409074 agaaccttcacaatgaaattttgtagtttttaaacgagatacaaattaattataa 36409020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 19099 - 19034
Alignment:
Q  27 gaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||||| ||| ||||||| ||  ||||||||||||| ||||||||||| ||||||||||||||    
T  19099 gaaattttgaagtttttaaaccagggacaaattaattattaattgtttaagaaattcataattatg 19034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 9175647 - 9175581
Alignment:
Q  26 tgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    |||| ||||| ||| ||||||| ||| ||||||||||||||| || |||||| ||||||||||||||    
T  9175647 tgaagttttgcagtttttaaacgagagacaaattaattataagttatttaagaaattcataattatg 9175581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 15863282 - 15863336
Alignment:
Q  28 aaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaatt 82  Q
    |||||||| ||| ||||||| |||||| |||||||||| ||||||||||| ||||    
T  15863282 aaattttggagtttttaaacgagatacgaattaattatgaattgtttaagaaatt 15863336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 29351852 - 29351807
Alignment:
Q  49 agatacaaattaattataaattgtttaagtaattcataattatgga 94  Q
    |||||||||||||| || |||| |||||| ||||||||||||||||    
T  29351852 agatacaaattaataatgaattttttaagaaattcataattatgga 29351807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 32540104 - 32540185
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||||| ||| | ||||||||| || | ||||||  ||| || ||||||||||||||| |||||| |||| ||||||||||    
T  32540104 aagaaccttcaaaatgaaattttataatttttaaatgagagacgaattaattataaattttttaagaaatttataattatgg 32540185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 3672291 - 3672327
Alignment:
Q  56 aattaattataaattgtttaagtaattcataattatg 92  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  3672291 aattaattatgaattgtttaaggaattcataattatg 3672327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 3292536 - 3292616
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  3292536 aagaaccttcacagtgaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 3292616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 43143224 - 43143304
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  43143224 aagaaccttcacagtgaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 43143304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 6689875 - 6689955
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||    
T  6689875 aagaaccttcacagtgaaattttgtagtctttaaacgagattcaaattaattataaattgtttaagaaattcataattatg 6689955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 35546480 - 35546400
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  35546480 aagaaccttcacagtgaaattttgtagtctttaaacgagatacaaattaattataaattatttaagaaattcataattatg 35546400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 13394881 - 13394959
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataatta 90  Q
    ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  13394881 aagaaccttcacaatgaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaaattcataatta 13394959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 42333414 - 42333495
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattg-tttaagtaattcataattatg 92  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||    
T  42333414 aagaaccttcacagtgaaattttgtagtctttaaacgagatacaaattaattataaattgttttaagaaattcataattatg 42333495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 28876954 - 28877034
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||    
T  28876954 aagaaccttcacaatgaaattttgtagtctttaaacgagatagaaattaattataaattgtttaagaaattcataattatg 28877034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 50204717 - 50204797
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||    
T  50204717 aagaaccttcacaatgaaattttgtagtctttaaacgagatataaattaattataaattgtttaagaaattcataattatg 50204797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 33136084 - 33136162
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataatta 90  Q
    ||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33136084 aagaaccttcacaatgaaatttcgtagtttttaaacaagatacaaattaattataaattgtttaagaaattcataatta 33136162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 40529541 - 40529464
Alignment:
Q  15 aaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    |||| ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40529541 aaccttcacaatgaaattttgtaatttttaaacaagatacaaattaattataaattgtttaagaaattcataattatg 40529464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 6236037 - 6235957
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  6236037 aagaaccttcacaatgaaattttgtaatttttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 6235957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 25931237 - 25931157
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||||| |||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  25931237 aagaaccttcacagttaaattttgtaatttttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 25931157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 48989856 - 48989776
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||||||||||||| |||| ||||||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  48989856 aagaaccttcacagtgaaattttttagtttttaaacgagatacaaattaatcataaattgtttaagaaattcataattatg 48989776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 17510871 - 17510951
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| ||||||||| || | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  17510871 aagaaccttcacaatgaaattttataatttttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 17510951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 36381985 - 36382065
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| | |||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  36381985 aagaaccttcacaataaaattttgtaatttttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 36382065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 29995622 - 29995703
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaatt-gtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||||| ||||||| ||||||||||||||||||| || ||||||| ||||||||||||||    
T  29995622 aagaaccttcacaatgaaattttgtagtttttaaacgagatacaaattaattataagttagtttaagaaattcataattatg 29995703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 30077275 - 30077356
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaatt-gtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||||| ||||||| ||||||||||||||||||| || ||||||| ||||||||||||||    
T  30077275 aagaaccttcacaatgaaattttgtagtttttaaacgagatacaaattaattataagttagtttaagaaattcataattatg 30077356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 20129834 - 20129762
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| ||||||||||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  20129834 tcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 20129762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 26438925 - 26438997
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| ||||||||||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  26438925 tcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 26438997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 34406930 - 34407002
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| ||||||||||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  34406930 tcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 34407002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 43356425 - 43356353
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| ||||||||||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  43356425 tcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 43356353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 47501294 - 47501222
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| ||||||||||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  47501294 tcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 47501222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 48130505 - 48130425
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| | |||| ||||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||||    
T  48130505 aagaaccttcacaataaaatattgtagtttttaaacgacatacaaattaattataaattgtttaagaaattcataattatg 48130425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 10352523 - 10352604
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaatt-gtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||| | ||||||| ||||||||||||||||||| || ||||||| ||||||||||||||    
T  10352523 aagaaccttcacaatgaaattttgtactttttaaacgagatacaaattaattataagttagtttaagaaattcataattatg 10352604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 29094675 - 29094594
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||||| ||||  |||||||||| ||| ||||||| |||||| |||||||||| ||||||||||| |||||||||||||||    
T  29094675 aagaaccttcaccatgaaattttgaagtttttaaacgagatacgaattaattatgaattgtttaagaaattcataattatgg 29094594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 30216394 - 30216462
Alignment:
Q  23 cagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||||||||||||||||||||  |||||||| ||||||||||||||||| || ||||||||||||||    
T  30216394 cagtgaaattttgtagtctttaaatgagatacaagttaattataaattgttt-agaaattcataattatg 30216462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 1818244 - 1818164
Alignment:
Q  13 agaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaatt-gtttaagtaattcataattatg 92  Q
    |||||| ||||| |||||||||||||| || |||| ||||||||||||||||||| || ||||||| ||||||||||||||    
T  1818244 agaaccttcacaatgaaattttgtagttttcaaacgagatacaaattaattataagttagtttaagaaattcataattatg 1818164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 13012709 - 13012637
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| ||||||||||||   ||||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  13012709 tcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattatttaagaaattcataattatg 13012637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 30110482 - 30110410
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| |||||||||||||| ||||||| |||||||||||| ||||||| |||||||| |||| |||||||||    
T  30110482 tcacaatgaaattttgtagtttttaaacgagatacaaattagttataaagtgtttaagaaatttataattatg 30110410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 9415410 - 9415345
Alignment:
Q  28 aaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||||||  || ||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||    
T  9415410 aaattttggggtttttaaacgagatacaaatttattatgaattgtttaagaaattcataattatgg 9415345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 26448538 - 26448499
Alignment:
Q  53 acaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  26448538 acaaattaattataaattgtttaagaaattcataattatg 26448499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 4038358 - 4038425
Alignment:
Q  26 tgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatgg 93  Q
    |||||||||| ||  ||||||| ||||| |||||| |||| ||||| ||||| |||||||||||||||    
T  4038358 tgaaattttggaggttttaaacgagatataaattagttatgaattgcttaagaaattcataattatgg 4038425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 31853715 - 31853673
Alignment:
Q  51 atacaaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||    
T  31853715 atacaaattaattatgaattgtttaagaaattcatacttatgg 31853673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 12756477 - 12756557
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  12756477 aagaaccttcacagtgaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 12756557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 45419110 - 45419030
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  45419110 aagaaccttcacagtgaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 45419030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 8058972 - 8059052
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| || || |||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  8058972 aagaaccttcccaatgaaatttcgtagtctttaaacaagatgcaaattaattataaattgtttaagaaattcataattatg 8059052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 31581259 - 31581339
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  31581259 aagaaccttcacaatgaaattttgtaatttttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 31581339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 44084244 - 44084321
Alignment:
Q  15 aaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    |||| ||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  44084244 aaccttcacaatgaaattttgtagtttttaaacgagatacaaattaattataaattatttaagaaattcataattatg 44084321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 2286317 - 2286237
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||| | ||||||| |||||||| |||||||||||||||||||| ||||||||||||||    
T  2286317 aagaaccttcacaatgaaattttgtaatttttaaacgagatacaacttaattataaattgtttaagaaattcataattatg 2286237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 35963219 - 35963139
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||  ||||||||||||||    
T  35963219 aagaaccttcacaatgaaattttgtaatttttaaacgagatacaaattaattataaattgtttaataaattcataattatg 35963139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 32126830 - 32126905
Alignment:
Q  15 aaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataatta 90  Q
    |||| ||| |||||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  32126830 aaccttcaaagtgaaattttgtaatttttaaacgagatacaaattaattataaattgtttaagaaattcataatta 32126905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 4554840 - 4554910
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataatta 90  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||    
T  4554840 tcacaatgaaattttgtagtttttaaacgagatacaaattaattataaattgtttaagaaattcttaatta 4554910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 7072174 - 7072252
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataatta 90  Q
    ||||||| || || ||||||||||||||  |||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  7072174 aagaaccttcccaatgaaattttgtagttattaaacgagatacaaattaattataaattgtttaagaaattcataatta 7072252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 17444682 - 17444759
Alignment:
Q  15 aaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    |||| ||||| ||||||||||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  17444682 aaccttcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 17444759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 2957784 - 2957864
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    |||||||  |||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  2957784 aagaacctacacaatgaaattttgtaatttttaaacgagatacaaattaattataaattgtttaagaaattcataaatatg 2957864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 6403450 - 6403522
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| ||||||||||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  6403450 tcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 6403522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 18982118 - 18982038
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||  |||||||||||| | ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||    
T  18982118 aagaaccttcacgatgaaattttgtaatttttaaacgagataaaaattaattataaattgtttaagaaattcataattatg 18982038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 21556623 - 21556543
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||  |||||||||| ||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  21556623 aagaaccttcaccatgaaattttggagtttttaaacgagatacaaattaattatgaattgtttaagaaattcataattatg 21556543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 41251280 - 41251352
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| ||||||||||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  41251280 tcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 41251352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 26162356 - 26162422
Alignment:
Q  26 tgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||||||||  ||||||||||||||    
T  26162356 tgaaattttgtagtttttaaacgagatacaaattagttataaattgtttaaaaaattcataattatg 26162422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 26238468 - 26238390
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataatta 90  Q
    ||||||| ||||| |||||||||||||| ||||||  |||||||||||||||||||||||||||   ||||||||||||    
T  26238468 aagaaccttcacaatgaaattttgtagtttttaaatgagatacaaattaattataaattgtttataaaattcataatta 26238390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 37621701 - 37621782
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||||| ||||| |||||||||| ||| ||||||| |||||| |||||||||| |||| |||||| |||||||||||||||    
T  37621701 aagaaccttcacaatgaaattttgaagtttttaaacgagatacgaattaattatgaattatttaagaaattcataattatgg 37621782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 42442505 - 42442433
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| ||||||||| || | ||||||| ||||| ||||||| ||||||||||||||| ||||||||| ||||    
T  42442505 tcacaatgaaattttataatttttaaacgagatataaattaactataaattgtttaagaaattcataaatatg 42442433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 18829376 - 18829309
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataa 87  Q
    |||| ||||||||| | ||| ||||||||| |||| |||||||||| ||||||||||| |||||||||    
T  18829376 tcaccgtgaaatttagaagtttttaaacaatatacgaattaattatgaattgtttaagaaattcataa 18829309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 26591555 - 26591496
Alignment:
Q  27 gaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcata 86  Q
    ||||||||  ||| ||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  26591555 gaaattttagagtttttaaacgagatacaaattaattatgaattgtttaagaaattcata 26591496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 816711 - 816777
Alignment:
Q  26 tgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    |||||||||| ||| ||||||  ||| ||||||||||||| ||||||||||  ||||||||||||||    
T  816711 tgaaattttggagtttttaaaggagagacaaattaattatgaattgtttaaaaaattcataattatg 816777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 15441838 - 15441904
Alignment:
Q  26 tgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    |||||||||| | | ||||||  ||| ||||||||||||| ||||||||||| ||||||||||||||    
T  15441838 tgaaattttggattttttaaatgagacacaaattaattatgaattgtttaagaaattcataattatg 15441904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 8147832 - 8147799
Alignment:
Q  59 taattataaattgtttaagtaattcataattatg 92  Q
    ||||||||||||||||||| ||||||||||||||    
T  8147832 taattataaattgtttaagaaattcataattatg 8147799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 3843994 - 3844034
Alignment:
Q  53 acaaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||||||||| | |||||||||| ||||||||||||||||    
T  3843994 acaaattaattgtgaattgtttaaataattcataattatgg 3844034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 35908055 - 35907977
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataatta 90  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  35908055 aagaaccttcacagtgaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaaattcataatta 35907977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 17445821 - 17445741
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  17445821 aagaaccttcataatgaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 17445741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 11957989 - 11958069
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  11957989 aagaaccttcacaatgaaattttgtagtttttaaacgagatacaaattaattataaattatttaagaaattcataattatg 11958069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 42310579 - 42310659
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  42310579 aagaaccttcacaatgaaattttgtaatttttaaactagatacaaattaattataaattgtttaagaaattcataattatg 42310659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 28463474 - 28463396
Alignment:
Q  13 agaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattat 91  Q
    |||||| ||||| |||||||||||||| ||||||| | ||||||||||||||||||||||||||| |||||||||||||    
T  28463474 agaaccttcacaatgaaattttgtagtttttaaacgaaatacaaattaattataaattgtttaagaaattcataattat 28463396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 33490230 - 33490153
Alignment:
Q  15 aaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    |||| ||||| |||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||||||    
T  33490230 aaccttcacaatgaaattttgtagtttttaaacgagatacgaattaattataaattgtttaagaaattcataattatg 33490153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 3829509 - 3829430
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  3829509 aagaaccttcacaatgaaattt-gtagtttttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 3829430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 7433949 - 7433869
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||| | ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||    
T  7433949 aagaaccttcacaatgaaattttgtaatttttaaacgagatacaaattaattataaattgttaaagaaattcataattatg 7433869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 41971897 - 41971977
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||||| ||||||| || || ||||||||||||||||||||||| ||||||||||||||    
T  41971897 aagaaccttcacaatgaaattttgtagtttttaaacgaggtataaattaattataaattgtttaagaaattcataattatg 41971977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 23313522 - 23313443
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattat 91  Q
    ||||||| ||||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||  |||||||||||||    
T  23313522 aagaaccttcacaatgaaattttgtaatttttaaacgagatacaaattaattataaattgtttaataaattcataattat 23313443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 32981695 - 32981775
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| | ||||||| || | ||| ||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  32981695 aagaaccttcacaataaaattttataatttttcaacgagatacaaattaattataaattgtttaagaaattcataattatg 32981775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 9901662 - 9901712
Alignment:
Q  41 tttaaacaagatacaaattaattataaattgtttaagtaattcataattatgg 93  Q
    |||||||||||  |||||||||||| |||| |||||| |||||||||||||||    
T  9901662 tttaaacaaga--caaattaattatgaattatttaagaaattcataattatgg 9901712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 28997257 - 28997177
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  28997257 aagaaccttcgcagtgaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 28997177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 34948421 - 34948499
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataatta 90  Q
    ||||||| ||||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  34948421 aagaaccttcacaatgaaattttgtaatttttaaacgagatacaaattaattataaattgtttaagaaattcataatta 34948499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 33228975 - 33229056
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaatt-gtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  33228975 aagaaccttcacaatgaaattttgtagtttttaaacgagatacaaattaattataaattagtttaagaaattcataattatg 33229056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 399138 - 399066
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| ||||||||||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  399138 tcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 399066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 13838325 - 13838245
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||| | ||||||| | ||||||||||||||||||||||||||  ||||||||||||||    
T  13838325 aagaaccttcacaatgaaattttgtaatttttaaacgatatacaaattaattataaattgtttaataaattcataattatg 13838245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 18339594 - 18339541
Alignment:
Q  39 tctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  18339594 tctttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 18339541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 29743804 - 29743731
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaatt-gtttaagtaattcataattatg 92  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||||||| || ||||||| ||||||||||||||    
T  29743804 tcacaatgaaattttgtagtttttaaacgagatacaaattaattataagttagtttaagaaattcataattatg 29743731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 10231828 - 10231747
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||||| ||||  |||||||||| ||  ||||||  |||||| |||||||||| ||||||||||| |||||||||||||||    
T  10231828 aagaaccttcaccatgaaattttgaagattttaaatgagatacgaattaattattaattgtttaagaaattcataattatgg 10231747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 28931519 - 28931450
Alignment:
Q  29 aattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatggaaaat 98  Q
    ||||||| ||| ||||||||||||| ||||||||||| |||| |||| | ||||||||||||||| ||||    
T  28931519 aattttgaagtttttaaacaagataaaaattaattatgaattatttacgaaattcataattatgggaaat 28931450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 12850063 - 12850101
Alignment:
Q  55 aaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  12850063 aaattaattatgaattgtttaagaaattcataattatgg 12850101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 4335203 - 4335248
Alignment:
Q  53 acaaattaattataaattgtttaagtaattcataattatggaaaat 98  Q
    ||||||||||||| ||||||||||| ||||||||||| | ||||||    
T  4335203 acaaattaattatgaattgtttaagaaattcataattgttgaaaat 4335248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 12098476 - 12098436
Alignment:
Q  53 acaaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||||||||||| |||| |||||| |||||||||||||||    
T  12098476 acaaattaattatgaattatttaagaaattcataattatgg 12098436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 12278496 - 12278576
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  12278496 aagaaccttcacagtgaaattttgtaatctttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 12278576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 17332259 - 17332339
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  17332259 aagaaccttcacaatgaaattttgtagtctttaaacaagatacaaattaattataaattgcttaagaaattcataattatg 17332339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 31501358 - 31501438
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31501358 aagaaccatcacaatgaaattatgtagtctttaaacaagatacaaattaattataaattgtttaagaaattcataattatg 31501438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 31680894 - 31680814
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  31680894 aagaaccttcgcagtgaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 31680814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 33430848 - 33430768
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  33430848 aagaaccttcgcagtgaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 33430768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 38269049 - 38269130
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||||| ||||| |||||||||||||| |||| || ||||||||||||||||||||||||||||| |||||||||||||||    
T  38269049 aagaaccttcacaatgaaattttgtagtttttatacgagatacaaattaattataaattgtttaagaaattcataattatgg 38269130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 37255120 - 37255054
Alignment:
Q  24 agtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataatta 90  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  37255120 agtgaaattttgtagtctttaaacgagatacaaattaattataaattatttaagaaattcataatta 37255054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 192434 - 192353
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||||| | ||| |||||||||||||| ||||||  ||||||||||||||||||||||||||||| |||||||||||||||    
T  192434 aagaaccttaacaatgaaattttgtagtttttaaatgagatacaaattaattataaattgtttaagaaattcataattatgg 192353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 1776014 - 1776094
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||| | ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||    
T  1776014 aagaaccttcacaatgaaattttgtaatttttaaacgagatacagattaattataaattgtttaagaaattcataattatg 1776094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 10034431 - 10034351
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| ||||||||| || | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  10034431 aagaaccttcacaatgaaattttataatttttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 10034351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 13818506 - 13818426
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||| | ||||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  13818506 aagaaccttcacaatgaaattttgtaatttttaaacgagatacaaattaattataaactgtttaagaaattcataattatg 13818426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 16333539 - 16333619
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| || || |||||||||||| | |||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  16333539 aagaaccttcccaatgaaattttgtaatttttaaacaagatacaaattaattataaattttttaagaaattcataattatg 16333619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 39657169 - 39657249
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||  ||||||||||||||    
T  39657169 aagaaccttcacaatgaaattttgtaatttttaaacgagatacaaattaattataaattgtttaataaattcataattatg 39657249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 39435222 - 39435145
Alignment:
Q  15 aaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    |||| ||||| ||||||||||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  39435222 aaccttcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 39435145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 15959585 - 15959665
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||||| ||||||| || | |||||||||||||||||| ||||| ||||||||||||||    
T  15959585 aagaaccttcacaatgaaattttgtagtttttaaacgagctgcaaattaattataaattgattaagaaattcataattatg 15959665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 26282964 - 26283034
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataatta 90  Q
    ||||| ||||||||||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  26282964 tcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattgtttaagaaattcataatta 26283034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 36293262 - 36293339
Alignment:
Q  15 aaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    |||| ||||| ||||||||||||   ||||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  36293262 aaccttcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattatttaagaaattcataattatg 36293339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 30297621 - 30297673
Alignment:
Q  41 tttaaacaagatacaaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||||| ||| ||||||||||||||||||||||||| |||||||||||||||    
T  30297621 tttaaacgagagacaaattaattataaattgtttaagaaattcataattatgg 30297673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 36291898 - 36291818
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaatt-gtttaagtaattcataattatg 92  Q
    ||||||| ||||| | ||||||| |||| ||||||| ||||||||||||||||||| || ||||||| ||||||||||||||    
T  36291898 aagaaccttcacaataaaattttatagtttttaaacgagatacaaattaattataagttagtttaag-aattcataattatg 36291818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 23034317 - 23034262
Alignment:
Q  28 aaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattc 83  Q
    ||||||| |||| |||||| |||| ||||||||||||||||||||||||| |||||    
T  23034317 aaattttatagtttttaaataagagacaaattaattataaattgtttaagaaattc 23034262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 23034486 - 23034427
Alignment:
Q  28 aaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataa 87  Q
    ||||||| |||| || |||| ||| ||||||||||||||||||||||||| |||||||||    
T  23034486 aaattttatagttttaaaacgagagacaaattaattataaattgtttaagaaattcataa 23034427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 43069384 - 43069329
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataa 67  Q
    ||||||| ||| | |||||||||||||| ||||||| |||||||||||||||||||    
T  43069384 aagaaccttcaaaatgaaattttgtagtttttaaacgagatacaaattaattataa 43069329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 31271902 - 31271854
Alignment:
Q  44 aaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    |||| ||| ||||||||||||||||| ||||||| ||||||||||||||    
T  31271902 aaacgagagacaaattaattataaatggtttaagaaattcataattatg 31271854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 16155485 - 16155446
Alignment:
Q  53 acaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||||||||||||||| ||||| ||||||||||||||    
T  16155485 acaaattaattataaattggttaagaaattcataattatg 16155446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 11779220 - 11779282
Alignment:
Q  31 ttttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||| ||| ||||||| ||  ||||||||||||| ||||||||||  |||||||||||||||    
T  11779220 ttttggagtttttaaacgagcgacaaattaattatgaattgtttaaaaaattcataattatgg 11779282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 35338378 - 35338308
Alignment:
Q  28 aaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatggaaaat 98  Q
    ||||||||  || ||||||  |||||| |||||||||| |||| |||||  ||||||||||||||||||||    
T  35338378 aaattttggggtttttaaatgagatacgaattaattatgaattttttaaaaaattcataattatggaaaat 35338308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 20368571 - 20368490
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||||| ||||| |||||||||| ||| ||||||| | | ||||||| ||||| |||| |  ||| |||||||||||||||    
T  20368571 aagaaccttcacaatgaaattttggagtttttaaacgataaacaaatttattatgaattatccaagaaattcataattatgg 20368490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 6503209 - 6503289
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  6503209 aagaaccttcacagtgaaatttcgtagtctttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 6503289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 45183508 - 45183428
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  45183508 aagaaccttcacagtgaaattttgtagtctttaaacgagatacaaattaattataaattttttaagaaattcataattatg 45183428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 5135815 - 5135735
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||||||||||||    
T  5135815 aagaaccttcacaatgaaattttgtagtttttaaatgagatacaaattaattataaattgtttaagaaattcataattatg 5135735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 6930533 - 6930613
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| |||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||    
T  6930533 aagaaccttcacaaggaaattttgtagtctttaaacgagatacaaattaattataaattgtttaagaagttcataattatg 6930613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 33041479 - 33041400
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||| || ||||||||||||||    
T  33041479 aagaaccttcacagtgaaattttgtagtctttaaatgagatacaaattaattataaattgttt-agaaattcataattatg 33041400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 38282935 - 38282857
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatggaaaat 98  Q
    ||||| |||||| ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  38282935 tcacaatgaaatcttgtagtttttaaacgagatacaaattaattataaattgtttaagaaattcataattatgggaaat 38282857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 34083758 - 34083838
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||| | ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||    
T  34083758 aagaaccttcacaatgaaattttgtaatttttaaacgagatataaattaattataaattgtttaagaaattcataattatg 34083838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 40081379 - 40081459
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| ||||||||| || | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  40081379 aagaaccttcacaatgaaattttataatttttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 40081459  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 19390672 - 19390595
Alignment:
Q  15 aaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    |||| ||||| ||||||||||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  19390672 aaccttcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 19390595  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 6269072 - 6269144
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| ||||||||||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  6269072 tcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 6269144  T

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Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 22968090 - 22968162
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| ||||||||||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  22968090 tcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 22968162  T

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Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 39772311 - 39772239
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| ||||||||||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  39772311 tcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 39772239  T

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Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 19565140 - 19565221
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaatt-gtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||||||| ||||||  ||||||||||||||||||| || ||||||| ||||||||||||||    
T  19565140 aagaaccttcacaatgaaattttgtagtttttaaatgagatacaaattaattataagttagtttaagaaattcataattatg 19565221  T

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Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 27935695 - 27935624
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| |||||||||||||| |||||||  ||||||||||||||| |||||||||||| ||||||||||||||    
T  27935695 tcacaatgaaattttgtagtttttaaacg-gatacaaattaattacaaattgtttaagaaattcataattatg 27935624  T

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Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 11017909 - 11017959
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaat 62  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  11017909 aagaaccttcacagtgaaattttgtagtctttaaacgagatacaaattaat 11017959  T

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Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 45336401 - 45336320
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaatt-gtttaagtaattcataattatg 92  Q
    ||||||| | ||| |||||||||||||| ||||||  ||||||||||||||||||| || ||||||| ||||||||||||||    
T  45336401 aagaacctttacaatgaaattttgtagtttttaaatgagatacaaattaattataagttagtttaagaaattcataattatg 45336320  T

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Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 38415448 - 38415534
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatggaaaat 98  Q
    ||||||| |||| || ||| ||| |||| ||||||| ||| |||||||||||||||||| |||||  ||||||| ||||||||||||    
T  38415448 aagaaccttcaccgtaaaaatttttagtttttaaactagagacaaattaattataaattatttaacaaattcatgattatggaaaat 38415534  T

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Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 29564794 - 29564868
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataat 88  Q
    ||||||| ||||| ||||||||| |||| ||||||  |||  |||||||||||||||||||||||| ||||||||||    
T  29564794 aagaaccttcacaatgaaattttatagtttttaaatgaga--caaattaattataaattgtttaagaaattcataat 29564868  T

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Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 8257355 - 8257275
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||||| ||||| |||||||||  ||| ||||||| | | | ||||||||||||||||| ||||| ||||||||||||||    
T  8257355 aagaaccttcacaatgaaattttaaagtttttaaacgaaagaaaaattaattataaattgcttaagaaattcataattatg 8257275  T

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Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 19814764 - 19814847
Alignment:
Q  10 agaagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||||||| ||||  |||||||||| ||| ||||||| |||||| ||| |||||| |||| |||||| ||| |||||||||||    
T  19814764 agaagaaccttcaccatgaaattttgaagtttttaaacgagatacgaatcaattatgaattttttaagaaatacataattatgg 19814847  T

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Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 35937749 - 35937668
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||||| ||||  |||| ||||| ||| ||||||  ||||||||||||||||| ||||||||||| || ||||||| ||||    
T  35937749 aagaaccttcaccatgaagttttggagtttttaaaagagatacaaattaattatgaattgtttaagaaactcataataatgg 35937668  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 40368715 - 40368673
Alignment:
Q  56 aattaattataaattgtttaagtaattcataattatggaaaat 98  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||    
T  40368715 aattatttatgaattgtttaagaaattcataattatggaaaat 40368673  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 27912517 - 27912456
Alignment:
Q  26 tgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataa 87  Q
    |||||||||| ||| ||||||| ||  ||||||||||||| ||||||||| | |||||||||    
T  27912517 tgaaattttggagtttttaaacgagggacaaattaattatgaattgtttatgaaattcataa 27912456  T

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Target: scaffold0002 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 480103 - 480175
Alignment:
Q  20 tcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatg 92  Q
    ||||| ||||||||||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  480103 tcacaatgaaattttgtaaattttaaacgagatacaaattaattataaattgtttaagaaattcataattatg 480175  T

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Target: scaffold0495 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 8548 - 8467
Alignment:
Q  12 aagaaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataattatgg 93  Q
    ||||||| ||||  |||||||||| ||  ||||||  |||||| |||||||||| ||||||||||| |||||||||||||||    
T  8548 aagaaccttcaccatgaaattttgaagattttaaatgagatacgaattaattattaattgtttaagaaattcataattatgg 8467  T

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Target: scaffold0069 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 18084 - 18012
Alignment:
Q  15 aaccctcacagtgaaattttgtagtctttaaacaagatacaaattaattataaattgtttaagtaattcataa 87  Q
    |||| ||||| ||||||||||||   ||||||| | |||||||||||||||||||||||||||  ||||||||    
T  18084 aaccttcacaatgaaattttgtaaattttaaacgatatacaaattaattataaattgtttaagacattcataa 18012  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 2139 - 2175
Alignment:
Q  56 aattaattataaattgtttaagtaattcataattatg 92  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  2139 aattaattatgaattgtttaagaaattcataattatg 2175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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