View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11383_low_9 (Length: 287)
Name: NF11383_low_9
Description: NF11383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11383_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 51708251 - 51708522
Alignment:
| Q |
20 |
tatatctatatattctcgaccccccgttgaacatgtattatatttataaagttttcacacatttaatag------------aatttacccactatagtac |
107 |
Q |
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| T |
51708251 |
tatatatatatattctcgacccc--gttgaacttgtattatatttataaagttttcacacatttaatagtaacatatatagaatttacccactatagtac |
51708348 |
T |
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| Q |
108 |
aatgaaagagataatctaatgctnnnnnnn-gtggtccaacttggacctatagttcaaatggtgcaaactatacaaaaccttccatacatagaaacagtg |
206 |
Q |
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| T |
51708349 |
aatgaaagagataatctaatgctaaaaaaaagtggtccaacttggacctatagttcaaatggtgcaaactatacaaaaccttccatacatagaaacaata |
51708448 |
T |
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| Q |
207 |
tctaaataaccatctaaatacaatatttcac--nnnnnnnnnntgtaaatacaaaattttaagcccctatgcta |
278 |
Q |
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| T |
51708449 |
tctaaataaccatctaaatacaatatttcacaaaaaaaaaaaatgtaaatacaaaattttaagcccctatgcta |
51708522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 85 - 237
Target Start/End: Original strand, 30716202 - 30716355
Alignment:
| Q |
85 |
atagaatttacccactatagtacaatgaaagagataatctaatgctnnnnnnn-gtggtccaacttggacctatagttcaaatggtgcaaactatacaaa |
183 |
Q |
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| T |
30716202 |
atagaatttacccactatagtacaatgaaagagataatctaatgctaaaaaaaagtggtctaacttggacctatagttcaaatggtgcaaactatacaaa |
30716301 |
T |
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| Q |
184 |
accttccatacatagaaacagtgtctaaataaccatctaaatacaatatttcac |
237 |
Q |
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| T |
30716302 |
accttccatacatagaaacagtggttaaataaccatgtaaatacaatatttcac |
30716355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 30716105 - 30716166
Alignment:
| Q |
26 |
tatatattctcgaccccccgttgaacatgtattatatttataaagttttcacacatttaatag |
88 |
Q |
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| T |
30716105 |
tatatattctcgacccc-cgttgaacatgtattatatttataaagttttcacacatttaatag |
30716166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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