View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11384_high_13 (Length: 310)
Name: NF11384_high_13
Description: NF11384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11384_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 40 - 250
Target Start/End: Complemental strand, 6932175 - 6931966
Alignment:
| Q |
40 |
ttcagacagtataatcatgagagagaagctggatccgtcacttattcaacnnnnnnnaacaacatttattcaccttaatggtgaaataagagagaagtat |
139 |
Q |
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| T |
6932175 |
ttcagacagtataatcatgagagagaagctggatccgtcacttattcaactttttttaacaacatttattcaccttaatgttgaaatgagagagaagtat |
6932076 |
T |
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| Q |
140 |
gtataaatctaaattaannnnnnnnnaaagaaaagtatatagcttttattttaaaattatgttgttatnnnnnnnnttgacattaaaaagtgaaaaatct |
239 |
Q |
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| T |
6932075 |
atataaatct-aattttttttttttttaagaaaagtatataacttttattttaaaattatgttgttataaaaaaaattgacattaaaaagtgaaaaatct |
6931977 |
T |
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| Q |
240 |
atatttaacta |
250 |
Q |
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||||||||||| |
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| T |
6931976 |
atatttaacta |
6931966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 6930631 - 6930596
Alignment:
| Q |
246 |
aactaaatttaagaaataatatgtgtcatggaccat |
281 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6930631 |
aactaaatttaagaaataatatgtgtcatggaccat |
6930596 |
T |
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