View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11384_high_1_N (Length: 903)
Name: NF11384_high_1_N
Description: NF11384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11384_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 642; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 30 - 748
Target Start/End: Complemental strand, 3724203 - 3723485
Alignment:
| Q |
30 |
gaatcaactccaaggaaaaaatgtttcattgttatagggatcaatacagctttcagtagcaggaaacgaagagattctgttcgaggaacttggatgccac |
129 |
Q |
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| T |
3724203 |
gaatcaactccaaggaaaaaatgtttcattgttatagggatcaatacagcttttagtagcaggaaacgaagagattctgttcgaggaacttggatgccac |
3724104 |
T |
|
| Q |
130 |
aaggtggttcaatgatatttcagtgtatccttgttttttctcttcactttttgattctatgtacctaatacatctgacccgtggtttgaaataaataatc |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3724103 |
aaggtggttcaatgatatttcagtgtatccttgttttttctcttcactttttgattctatgtacctaatgcatctgacccgtggtttgaaataaataatc |
3724004 |
T |
|
| Q |
230 |
catcagctgaggatagaaagaagttgcaggaagaaaagggcataatcataaattttgttataggtcacaggttagattcaatgtcccctgatattcactg |
329 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
3724003 |
catcagctgaggatagaaagaagttggaggaagaaaagggcataatcatacgttttgttataggtcgcaggttatattcaatgtcccctgatattcactg |
3723904 |
T |
|
| Q |
330 |
tcttttttagcataattacatatttatgattattttgttgcagttaagttcacatgtgatttgctcatcaaaactttgtttgtgaccttatcatcaaatt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3723903 |
tcttttttagcataattacatatttatgattattttgttgcagttaagttcacatgtgatttgctcatcaaaactttgtttgtgaccttatcatcaaatt |
3723804 |
T |
|
| Q |
430 |
attttaaactgataattgatagttgatattctctcattctgatgtgaagttgatttatatatctannnnnnnatttaaatgatctttaaataattattgg |
529 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
3723803 |
atttcaaactgataattgatagttgatattctctcattctgatgtgaagttggtttatatatctaattttttatttaaatgatctttaaataattattgg |
3723704 |
T |
|
| Q |
530 |
caaggtcgatgatgaactcctattggttgattaaattcacaattctttgtggtgctagaagtaattgattgcccatatttagttcacctttttgtctata |
629 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3723703 |
caaggtcgatgatgaactcctattggttgattaaattcacaattctttgtggtgttagaagtaattgattgcccatatttagttcacctttttgtctata |
3723604 |
T |
|
| Q |
630 |
gttctacatcaagtggaattcttgacaaagctattgaggcagaagaaaaacttcatgctgacattttgaggctggtgatctttcttccctattatttttc |
729 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
3723603 |
gttctacatcaagtggagttcttgacaaagctattgaggcagaagaaaaacttcatgctgacattttgaggctggtgatcttacttccctgttatttttc |
3723504 |
T |
|
| Q |
730 |
attgaaatatattttttat |
748 |
Q |
| |
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|||||||||||||| |||| |
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| T |
3723503 |
attgaaatatatttattat |
3723485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 741 - 885
Target Start/End: Complemental strand, 3723459 - 3723315
Alignment:
| Q |
741 |
ttttttatatgaaaataaatacatccatgtttgaacagaaccatgtcgaaggatatttggaactatcagctaagacgaaaacctatttttcaactgttgt |
840 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3723459 |
ttttttatatgaaaataaatacatccatgtttgaacagaaccatgtcgaaggatatttggaactatcagctaagacgaaaacctatttttcaactgttct |
3723360 |
T |
|
| Q |
841 |
tgccttgtgggatgcagaattttatgtcaaagttgatgatgatgt |
885 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3723359 |
tgccttgtgggatgcagaattttatgtcaaagttgatgatgatgt |
3723315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 782 - 885
Target Start/End: Complemental strand, 37186505 - 37186402
Alignment:
| Q |
782 |
catgtcgaaggatatttggaactatcagctaagacgaaaacctatttttcaactgttgttgccttgtgggatgcagaattttatgtcaaagttgatgatg |
881 |
Q |
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||||| |||||||| | ||| ||||||| ||||| || ||||||||| | |||| |||| |||||||||||| || || ||| ||||||||||||||| |
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| T |
37186505 |
catgttgaaggataccttgaattatcagcaaagacaaagacctattttgccactgctgttaacttgtgggatgctgacttctatatcaaagttgatgatg |
37186406 |
T |
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| Q |
882 |
atgt |
885 |
Q |
| |
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|||| |
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| T |
37186405 |
atgt |
37186402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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