View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11384_high_7 (Length: 341)
Name: NF11384_high_7
Description: NF11384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11384_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 39 - 304
Target Start/End: Original strand, 44786277 - 44786532
Alignment:
| Q |
39 |
atttcaaggtttttaggagcagcctcttcctgccactcaacaagattttaaattggcttcaaaatctagaacaaacaaattcttaaaaagtagaggtgtc |
138 |
Q |
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| T |
44786277 |
atttcaaggtttttaggagcagcctcttcctgccactcaacaagattttaaattggcttcaaaatctaaaacaaacaaattcttaaaa-gtagaggtgtc |
44786375 |
T |
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| Q |
139 |
cgcaactacaaattgactcgattaatatgatgattcaactcaatcaaaagcgtttgattcaattttattttagtctgaatcgaaccaaaataactcaatc |
238 |
Q |
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| T |
44786376 |
cgtaagtacaaattgactcgattaatatgatgattcaactcaatcagaagcgtttgattcaattttattttagtctaaatcgaaccaaaataactcaatc |
44786475 |
T |
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| Q |
239 |
agtttgtaagaatgatatgaattaaaacaaaaacaaaacccaatggaatttcccatccaatctttt |
304 |
Q |
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| T |
44786476 |
agtttgtaagaatg---------aaaacaaaaacaaaacccaacggaatttcccatccaatctttt |
44786532 |
T |
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