View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11384_high_8 (Length: 334)
Name: NF11384_high_8
Description: NF11384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11384_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 5676227 - 5675902
Alignment:
| Q |
1 |
cttagaatatgaattatctcacaatcatctaattctacatcctatctctgtatggaaatagattatctgtgattgcgagttacaacaattgtgaatcttg |
100 |
Q |
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| T |
5676227 |
cttagaatatgaattatctcacaatcatctaattctacatcctatctctctatggaaatagattatctgtgattgcgagttacaacaattgtgaatcttg |
5676128 |
T |
|
| Q |
101 |
agcattgaatgaacatcggaccccttgtgttttcccatcattaaattgattatgaatacaacacaaagtacaagct-aaaatctttatccaatggtcgag |
199 |
Q |
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| T |
5676127 |
accattgaatgaagatcggaccgcttgtgttttcctatcattaaattgattatgaatacaacacaaagtacgagctaaaaatctttatccaatggtcgag |
5676028 |
T |
|
| Q |
200 |
attcataagtgcagtgactatgagagtattcggatacctctcgttggaacaataaaacaagtcttcacattctattgatcaagatgatataataactacc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5676027 |
attcataagtgcagtgactatgagagtattcggatacctcacgtgggaacaataaaacaagtcttcacattctattgatcaagataatataataactacc |
5675928 |
T |
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| Q |
300 |
taaaataattctcttgagcttcatct |
325 |
Q |
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|||||||||||||||||||||||||| |
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| T |
5675927 |
taaaataattctcttgagcttcatct |
5675902 |
T |
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