View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11384_low_1 (Length: 355)
Name: NF11384_low_1
Description: NF11384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11384_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 339
Target Start/End: Original strand, 5675902 - 5676228
Alignment:
| Q |
14 |
agatgaagctcaagagaattattttaggtagttattatatcatcttgatcaatagaatgtgaagacttgttttattgttccaacgagaggtatccgaata |
113 |
Q |
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| T |
5675902 |
agatgaagctcaagagaattattttaggtagttattatattatcttgatcaatagaatgtgaagacttgttttattgttcccacgtgaggtatccgaata |
5676001 |
T |
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| Q |
114 |
ctctcatagtcactgcacttatgaatctcgaccattggataaagatttt-agcttgtactttgtgttgtattcataatcaatttaatgataggaaaacac |
212 |
Q |
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| T |
5676002 |
ctctcatagtcactgcacttatgaatctcgaccattggataaagatttttagctcgtactttgtgttgtattcataatcaatttaatgataggaaaacac |
5676101 |
T |
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| Q |
213 |
aaggggtccgatgttcattcaatgctcaagattcacaattgttgtaactcgcaatcacagataatctatttccatacagagataggatgtagaattagat |
312 |
Q |
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||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5676102 |
aagcggtccgatcttcattcaatggtcaagattcacaattgttgtaactcgcaatcacagataatctatttccatagagagataggatgtagaattagat |
5676201 |
T |
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| Q |
313 |
gattgtgagataattcatattctaagt |
339 |
Q |
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| T |
5676202 |
gattgtgagataattcatattctaagt |
5676228 |
T |
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