View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_high_1 (Length: 647)
Name: NF11385A_high_1
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 23 - 632
Target Start/End: Complemental strand, 33026416 - 33025807
Alignment:
| Q |
23 |
ttcttaccttcggtgtgtcaatctcgaacacaggtctcttctgattcacaatcttttgattctcaaactgtttttgcatgacagatggaaatgttcttga |
122 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33026416 |
ttcttaacttcggtgtgtcaatctcgaacacaggtctcttctgattcacaatcttttgattctcagactgtttttgcatgacagatggaaatgttcttga |
33026317 |
T |
|
| Q |
123 |
aggggattgttctaatcccatcaactttgcaacaagattggtacttttttccttccttggaaaagtcggtgaacacgaagaatcagaaagtttgtcatac |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33026316 |
aggggattgttctaatcccatcaactttgcaacaagattggtacttttttccttccttggaaaagtcggtgaacacgaagaatcagaaagtttgtcatac |
33026217 |
T |
|
| Q |
223 |
caaacaacagatgattggcttgagcttgtagaagggaatgctgctgaagctgaatccaatccttcagaagtgcttgtgctttggaatagattttgtcgaa |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33026216 |
caaacaacagatgattggcttgagcttgtagaagggaatgctgctgaagctgaatccaatccttcagaagtacttgtgctttggaatagattttgtcgaa |
33026117 |
T |
|
| Q |
323 |
ccaaactctccttaatcactttcttaagttcctctctacaactacttgaagaaccataagctgaattgtgttcaaaaaattgattagaatgtgttgatct |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33026116 |
ccaaactctccttaatcactttcttaagttcctctctacaactacttgaagaaccataagctgaattgtgttcaaaaaattgattagaatgtgttgatct |
33026017 |
T |
|
| Q |
423 |
atttccatcattcacatgtgcatcaattttacttctttcatgtttctcctcttgtcttctcttcgatcgacccatactattcgaagcttcctgcaccttt |
522 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | |
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| T |
33026016 |
atttccatcattcacatgtgcatcaattttacttctttcatgtttctcctcttgtcttctcttcgatcgactcatactattcgaagcttcttgcacctgt |
33025917 |
T |
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| Q |
523 |
cgaagcatctctagagactcttgcaaatcaagagcaccttttaacaaatcctttgcgatatcatcggattttccatcgtacctcacacctctagaccacg |
622 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33025916 |
cgaagcatctctagagactcttgcaaatcaagagcaccttttaacaaatcctttgcgatatcatcggattttccatcgtacctcacacctctagaccacg |
33025817 |
T |
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| Q |
623 |
actcaatcat |
632 |
Q |
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|||||||||| |
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| T |
33025816 |
actcaatcat |
33025807 |
T |
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