View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_high_27 (Length: 247)
Name: NF11385A_high_27
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5860131 - 5859909
Alignment:
| Q |
1 |
agtctaaaaattcttggagcaatatattttctggttgaaatgctgtgtaacaactaaactttgtactagaatgagatgaaggaaagacttaagacatgca |
100 |
Q |
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| T |
5860131 |
agtctaaaaattcttggagcattattttttctggttgaaatgctgtgaaacagctaaactttgtactagaatgaaatgaaggaaagactaaa--catgca |
5860034 |
T |
|
| Q |
101 |
aggaatcaatttatgaattcagaattttcaatttgcatttgtctttgaaggttaaagttagattaggggatatacaatctcatacaattttattgaagat |
200 |
Q |
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| T |
5860033 |
aggaatcaacttatgaatttagaattcgcacttggcatttgtctttgaaggttaaagttagatgaggggatgtacaatctcatacaattttattgaagat |
5859934 |
T |
|
| Q |
201 |
ttgcaatgaaattaatgtacaatat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
5859933 |
ttgcaatgaaattaatgtacaatat |
5859909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5898309 - 5898103
Alignment:
| Q |
1 |
agtctaaaaattcttggagcaatatattttctggttgaaatgctgtgtaacaactaaactttgtactagaatgagatgaaggaaagacttaagacatgca |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5898309 |
agtctaaaaattcttggagcaatat-ttttctggttgaaatgctgtgtaacac-----------------atgagatgaaggaaagacttaagacatgca |
5898228 |
T |
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| Q |
101 |
aggaatcaatttatgaattcagaattttcaatttgcatttgtctttgaaggttaaagttagattaggggatatacaatctcatacaattttattgaagat |
200 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5898227 |
aggaatcaatttatgaattcagaatttgcaattggcatttgtctttgaagattaaagttagattaggggatatacaatcttatacaattttattgaagat |
5898128 |
T |
|
| Q |
201 |
ttgcaatgaaattaatgtacaatat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
5898127 |
ttgcaatgaaattaatgtacaatat |
5898103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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