View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_high_32 (Length: 231)

Name: NF11385A_high_32
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_high_32
NF11385A_high_32
[»] chr3 (2 HSPs)
chr3 (1-225)||(54877618-54877837)
chr3 (141-198)||(48444584-48444641)
[»] chr7 (1 HSPs)
chr7 (141-193)||(37334878-37334930)
[»] chr6 (1 HSPs)
chr6 (152-199)||(33590285-33590332)
[»] chr8 (4 HSPs)
chr8 (151-193)||(39405144-39405186)
chr8 (142-199)||(22330768-22330825)
chr8 (2-134)||(32411953-32412085)
chr8 (143-199)||(14581705-14581761)
[»] chr5 (2 HSPs)
chr5 (153-199)||(9621898-9621944)
chr5 (150-199)||(29799715-29799764)
[»] chr4 (1 HSPs)
chr4 (150-199)||(21443100-21443149)
[»] chr1 (3 HSPs)
chr1 (150-199)||(30543317-30543366)
chr1 (151-200)||(33854794-33854843)
chr1 (151-200)||(33926079-33926128)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 54877618 - 54877837
Alignment:
Q  1 gtggagatgtagtcaaggcgtactcatgtgtggtgatccgacagggcttcacgtgctctatcgtcgtattttaccatgttttgtcttgggatttggctta 100  Q
    ||||| ||| ||||||||| |||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||     ||||||||||||    
T  54877618 gtggatatggagtcaaggcatactcatgtgcggtgatccgacagggcttcacgagctctattgtcgtattttaccatgttttg-----ggatttggctta 54877712  T
Q  101 atgggccttgctcttgtaggtttctagccggtcctgaacatttataatcaatatatttttaattttaaaaatgtcataataatatagattaaagttgaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54877713 atgggccttgctcttgtaggtttctagccggtcctgaacatttataatcaatatatttttaattttaaaaatgtcataataatatagattaaagttgaaa 54877812  T
Q  201 cccattaatgcttagataatttgac 225  Q
    ||||||||||||||||| |||||||    
T  54877813 cccattaatgcttagatgatttgac 54877837  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 48444641 - 48444584
Alignment:
Q  141 tttataatcaatatatttttaattttaaaaatgtcataataatatagattaaagttga 198  Q
    ||||| || ||||||||||||||||||||||| | |||| |||||| |||||| ||||    
T  48444641 tttatgattaatatatttttaattttaaaaatattataacaatatatattaaatttga 48444584  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 37334878 - 37334930
Alignment:
Q  141 tttataatcaatatatttttaattttaaaaatgtcataataatatagattaaa 193  Q
    ||||| || |||| |||||||||||||||||| | ||||||||||||||||||    
T  37334878 tttatgattaataaatttttaattttaaaaatattataataatatagattaaa 37334930  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 33590285 - 33590332
Alignment:
Q  152 tatatttttaattttaaaaatgtcataataatatagattaaagttgaa 199  Q
    ||||||||||||||||||||| | ||||||| |||||||||| |||||    
T  33590285 tatatttttaattttaaaaatattataataacatagattaaatttgaa 33590332  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 39405186 - 39405144
Alignment:
Q  151 atatatttttaattttaaaaatgtcataataatatagattaaa 193  Q
    |||||||||||||||||||||| | ||||||||| ||||||||    
T  39405186 atatatttttaattttaaaaatattataataataaagattaaa 39405144  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 22330825 - 22330768
Alignment:
Q  142 ttataatcaatatatttttaattttaaaaatgtcataataatatagattaaagttgaa 199  Q
    ||||||| ||||||||||||||||||||||| | || | || |||||||||| |||||    
T  22330825 ttataattaatatatttttaattttaaaaatattatcacaacatagattaaatttgaa 22330768  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 134
Target Start/End: Original strand, 32411953 - 32412085
Alignment:
Q  2 tggagatgtagtcaaggcgtactcatgtgtggtgatccg-acagggcttcacgtgctctatcgtcgtattttaccatgttttgtcttgggatttggctta 100  Q
    |||||||| |||||||| |||||| | |||||||||||  |||||  |||  ||||||| ||  |||||||| || ||||| |||||||| |||||||||    
T  32411953 tggagatggagtcaaggtgtactcctatgtggtgatccacacaggaattcgtgtgctctttcaccgtatttttccttgttt-gtcttgggctttggctta 32412051  T
Q  101 atgggccttgctcttgtaggtttctagccggtcc 134  Q
    | | |||||||| |  |||| |||||| ||||||    
T  32412052 aagagccttgctttattaggcttctagacggtcc 32412085  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 14581705 - 14581761
Alignment:
Q  143 tataatcaatatatttttaattttaaaaatgtcataataatatagattaaagttgaa 199  Q
    |||||| | |||||||||||||||||||||   ||||||| |||||||||| |||||    
T  14581705 tataattactatatttttaattttaaaaataatataataacatagattaaaattgaa 14581761  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 9621898 - 9621944
Alignment:
Q  153 atatttttaattttaaaaatgtcataataatatagattaaagttgaa 199  Q
    |||||||||||||||||||| | |||| ||||||||||||| |||||    
T  9621898 atatttttaattttaaaaatattataacaatatagattaaatttgaa 9621944  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 29799764 - 29799715
Alignment:
Q  150 aatatatttttaattttaaaaatgtcataataatatagattaaagttgaa 199  Q
    ||||||||||||||||||||||| | ||||||| ||| |||||| |||||    
T  29799764 aatatatttttaattttaaaaatattataataacatatattaaatttgaa 29799715  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 21443149 - 21443100
Alignment:
Q  150 aatatatttttaattttaaaaatgtcataataatatagattaaagttgaa 199  Q
    ||||||||||||||||| ||||| | ||||||||||| |||||| |||||    
T  21443149 aatatatttttaatttttaaaatattataataatatatattaaatttgaa 21443100  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 30543317 - 30543366
Alignment:
Q  150 aatatatttttaattttaaaaatgtcataataatatagattaaagttgaa 199  Q
    ||||||||||||||||||| ||| ||||||  |||||||||||| |||||    
T  30543317 aatatatttttaattttaagaatatcataactatatagattaaatttgaa 30543366  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 33854794 - 33854843
Alignment:
Q  151 atatatttttaattttaaaaatgtcataataatatagattaaagttgaaa 200  Q
    ||||||||||||| |||||||| |||||| || |||||||||| ||||||    
T  33854794 atatatttttaatattaaaaatatcataacaacatagattaaatttgaaa 33854843  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 33926128 - 33926079
Alignment:
Q  151 atatatttttaattttaaaaatgtcataataatatagattaaagttgaaa 200  Q
    ||||||||||||| |||||||| |||||| || |||||||||| ||||||    
T  33926128 atatatttttaatattaaaaatatcataacaacatagattaaatttgaaa 33926079  T

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