View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_high_36 (Length: 215)
Name: NF11385A_high_36
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_high_36 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 53676061 - 53675856
Alignment:
| Q |
10 |
aaatgaaggttgggcagacagaagaactcgggcgtccataagtctatcccttttggcagcagaagaagaccttagaattctattataatttcttcnnnnn |
109 |
Q |
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| T |
53676061 |
aaatgaaggttgggcagacagaagaactcgggcgtccataaatctatcccttttggcagcagaagaagaccttagaattctattataatttcttcaaaaa |
53675962 |
T |
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| Q |
110 |
nnnnnnngaattctattataattggttgacttttacatgcatatattgttgtggataatggtccactggtctgaggtttacagggctggtgtctttcctt |
209 |
Q |
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| T |
53675961 |
agaaaaagaattctattataattggttgacttttacatgcatatattgttgtggataatggtccactggtctgaggtttacagggctggtgtctttcctt |
53675862 |
T |
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| Q |
210 |
ataaaa |
215 |
Q |
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|||||| |
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| T |
53675861 |
ataaaa |
53675856 |
T |
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