View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_high_9 (Length: 418)
Name: NF11385A_high_9
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_high_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Complemental strand, 17432489 - 17432087
Alignment:
| Q |
16 |
gccaaagttacagtcaagcgaagaacagaatgattagttgaatcatcgtaagatacagtttcaaacacaacaaatcctcttgcatatcgaaaccttcctg |
115 |
Q |
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| T |
17432489 |
gccaaagttacagtcaaacgaagaacagaatgattagttgaatcatcataagatacagtttcaaacacaacaaatcctcttgcatatcgaaaccttcctg |
17432390 |
T |
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| Q |
116 |
ttccggaaacaacagaaagctctcttgaattttcgcgttgtcgactagcaccttgaatctccaaagtgctaccactatattgcccattgttgaacacaag |
215 |
Q |
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| T |
17432389 |
ttccggaaacaacagaaagctctcttgaattttcgcgttgtcgactagcaccttgaatctccaaagtgctaccactatattgcccattgttgaacacaag |
17432290 |
T |
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| Q |
216 |
tgacaaaactatgctcacatttgaaccatcaagagatgttactgtaatcataccttgagcccttccgatttgagttgaacctggattagggtttaacata |
315 |
Q |
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| T |
17432289 |
tgacaaaactatgctcacatttgaaccatcaagagatgttactgtaatcataccttgagcccttccgatttgagttgaacctggattagggtttaacata |
17432190 |
T |
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| Q |
316 |
atagggtcatcgactacaaatattgttccaaatgagttgtaggaccaaacctttccattgatgccgataactggttgaacggttgcgccaactccttttc |
415 |
Q |
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| T |
17432189 |
atagggtcatcgactacaaatattgttccaaatgagttgtaggaccaaacctttccattgatgccgataactggttgaacggttgcgccaactccttttc |
17432090 |
T |
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| Q |
416 |
cga |
418 |
Q |
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| T |
17432089 |
cga |
17432087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 59 - 386
Target Start/End: Complemental strand, 17436319 - 17435992
Alignment:
| Q |
59 |
catcgtaagatacagtttcaaacacaacaaatcctcttgcatatcgaaaccttcctgttccggaaacaacagaaagctctcttgaattttcgcgttgtcg |
158 |
Q |
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| T |
17436319 |
catcataagacatagtttcaaacacaacaaaccctcttgcatatcgaaaccttcctgttccagaaacaacagagagctctcttgaattctcacgttgacg |
17436220 |
T |
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| Q |
159 |
actagcaccttgaatctccaaagtgctaccactatattgcccattgttgaacacaagtgacaaaactatgctcacatttgaaccatcaagagatgttact |
258 |
Q |
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| T |
17436219 |
actattaccttgtatctccaaagtgctaccactatattccccattgttgaacacaagtgacaaaactatgttcacatttgcaccatctagagatgtcact |
17436120 |
T |
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| Q |
259 |
gtaatcataccttgagcccttccgatttgagttgaacctggattagggtttaacataatagggtcatcgactacaaatattgttccaaatgagttgtagg |
358 |
Q |
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| T |
17436119 |
gtaattacaccttgtgcccttccaatttgagttgaaaatggactagggcttaacatgacggggtcatcaacgacaaatattgttccgaatgagtggtaag |
17436020 |
T |
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| Q |
359 |
accaaacctttccattgatgccgataac |
386 |
Q |
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| T |
17436019 |
accaaacccttccgttgatgccgataac |
17435992 |
T |
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