View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_10 (Length: 467)
Name: NF11385A_low_10
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_10 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Original strand, 3067317 - 3067771
Alignment:
| Q |
13 |
aaaattagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaacatcaaggatatatcaaatatcaatgtgccaga |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067317 |
aaaattagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaacatcaaggatatatcaaatatcaatgtgccaga |
3067416 |
T |
|
| Q |
113 |
atataaacaaataataatacatgcagtcttccatacaagctagaatacattgtacttcaataaaaggctttagatgcgtataatcgttttgatgccaata |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067417 |
atataaacaaataataatacatgcagtcttccatacaagctataatacattgtacttcaataaaaggctttagatgcgtataatcgttttgatgccaata |
3067516 |
T |
|
| Q |
213 |
agtgccattcaaaatcttagagtagtacagatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatgga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067517 |
agtgccattcaaaatcttagagtagtacagatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatgga |
3067616 |
T |
|
| Q |
313 |
tcgtcaggatccaccagtgagtaactttttcgacaccgacatgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactac |
412 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067617 |
tcgtcaggatccaccagtgagtaactttttcgacaccgacgtgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactac |
3067716 |
T |
|
| Q |
413 |
ctaatttaggaaaataatgacatatattttcaggctgagaccacactatagtcca |
467 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067717 |
ctaatttaggaaaataatgacatatattttcaggctgagaccacactatagtcca |
3067771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 241 - 467
Target Start/End: Original strand, 3071184 - 3071410
Alignment:
| Q |
241 |
agatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaacttt |
340 |
Q |
| |
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||||||||||||| |||| |||||||||||||| |||| ||||||| |||||||||||||||||| |||||| |||||||| | ||||||||||| || |
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| T |
3071184 |
agatcctttgttttactttgttcatcttctgcacatccttgtatgaaatctggcttgcagctaccatgtggatcatcaggatcaagcagtgagtaacgtt |
3071283 |
T |
|
| Q |
341 |
ttcgacaccgacatgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatatt |
440 |
Q |
| |
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|| |||||||||||||||| ||||||| ||||||||||||||| | |||||||||||||||||||||||||| | || || ||| ||||||||||| |
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| T |
3071284 |
ttggacaccgacatgttggtctcttatcatctcccaaagtgcagatggtattatatccacaaacaccactacctgaactaacaatatattgacatatatt |
3071383 |
T |
|
| Q |
441 |
ttcaggctgagaccacactatagtcca |
467 |
Q |
| |
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|| ||| |||||||||||| ||||||| |
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|
| T |
3071384 |
tttaggatgagaccacactgtagtcca |
3071410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 255 - 467
Target Start/End: Complemental strand, 3055768 - 3055556
Alignment:
| Q |
255 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
354 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| |||||||||||||||||||| |||||| |||||||| ||||||||||| | |||| ||||| ||||| |
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|
| T |
3055768 |
acttagttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaagtggatcatcaggatcaaccagtgagtatcgttttggacactgacat |
3055669 |
T |
|
| Q |
355 |
gttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcaggctgagacc |
454 |
Q |
| |
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||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||| || ||||| ||||||||| ||||| | ||||| |
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| T |
3055668 |
gttggtctcttatcaactcccaaagtgcagaagctattatatccacaaacaccactcccttcattagcaatataattacatatattatcaggtttagacc |
3055569 |
T |
|
| Q |
455 |
acactatagtcca |
467 |
Q |
| |
|
||||||| ||||| |
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|
| T |
3055568 |
acactatggtcca |
3055556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 241 - 467
Target Start/End: Complemental strand, 3040773 - 3040547
Alignment:
| Q |
241 |
agatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaacttt |
340 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |||| |||| || |||||||||||||||||| | |||| ||||||||| || ||||||||||| | |
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|
| T |
3040773 |
agatcctttgttttacatagttcatcttctgcacatccttgtacgaaatctggcttgcagctaccataaggatagtcaggatcaactagtgagtaactat |
3040674 |
T |
|
| Q |
341 |
ttcgacaccgacatgttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatatt |
440 |
Q |
| |
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| |||||||| ||| ||| ||| ||| |||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
3040673 |
ctggacaccgaaatgctggtctcgtatcatctcccaaagtgcatatgctattatatccacaaacaccactaccttcagtaacaaaataatgacatatatt |
3040574 |
T |
|
| Q |
441 |
ttcaggctgagaccacactatagtcca |
467 |
Q |
| |
|
| ||| |||||||||||| ||||||| |
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|
| T |
3040573 |
tcgaggatgagaccacactgtagtcca |
3040547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 255 - 459
Target Start/End: Complemental strand, 3034906 - 3034702
Alignment:
| Q |
255 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
354 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||| ||||| | |||| ||||| ||||| |
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| T |
3034906 |
acttggttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaaatggatcttcaggatcaaccagcgagtatcgttttggacactgacat |
3034807 |
T |
|
| Q |
355 |
gttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacctaatttaggaaaataatgacatatattttcaggctgagacc |
454 |
Q |
| |
|
| || ||||||| || |||||||||| ||||||||||||||||||||||||||||| || || |||| ||||||||| ||||||| ||||| |
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|
| T |
3034806 |
ttcggtctcttatcaacttccaaagtgcataagctattatatccacaaacaccactacctgcactaacaatataagtacatatattatcaggcttagacc |
3034707 |
T |
|
| Q |
455 |
acact |
459 |
Q |
| |
|
||||| |
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|
| T |
3034706 |
acact |
3034702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 255 - 414
Target Start/End: Complemental strand, 3042948 - 3042789
Alignment:
| Q |
255 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
354 |
Q |
| |
|
||||||||||||||||||| |||| || |||| || ||||| ||| |||||| |||||| || | ||| |||||||||||||||||| ||||| ||||| |
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|
| T |
3042948 |
acttagttcatcttctgcacatccttgcatgaagtttggctcgcaagtaccaagtggatcatcggcatcaaccagtgagtaactttttggacactgacat |
3042849 |
T |
|
| Q |
355 |
gttggcctcttattctctcccaaagtgcagtagctattatatccacaaacaccactacct |
414 |
Q |
| |
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||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
3042848 |
gttggtcacttatcaactcccaaagtgcagaagctattatatccacaaacaccactacct |
3042789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 289 - 414
Target Start/End: Original strand, 3063557 - 3063682
Alignment:
| Q |
289 |
tctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacatgttggcctcttattctctcccaaagtgcagtagc |
388 |
Q |
| |
|
|||||||||||||| ||| ||||||| | |||||| | ||||||||| |||| ||||| ||||| |||| ||||||| ||||||||||||||| ||| |
|
|
| T |
3063557 |
tctggcttgcagctgccatatggatcattaggatcaatcagtgagtactgttttggacactgacattttggtctcttatcatctcccaaagtgcagaagc |
3063656 |
T |
|
| Q |
389 |
tattatatccacaaacaccactacct |
414 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
3063657 |
tattatatccacaaacaccactacct |
3063682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 255 - 395
Target Start/End: Original strand, 25125326 - 25125466
Alignment:
| Q |
255 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
354 |
Q |
| |
|
|||||||||||||||| || |||| || |||| |||| ||| ||| |||||| |||||| || ||||| |||||||||||||||||| ||||| ||||| |
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|
| T |
25125326 |
acttagttcatcttctccacatccttgcatgaagtcttgctcgcaagtaccaagtggatcatcgggatcaaccagtgagtaactttttggacactgacat |
25125425 |
T |
|
| Q |
355 |
gttggcctcttattctctcccaaagtgcagtagctattata |
395 |
Q |
| |
|
||||| ||||||| |||||||||||||| |||||||||| |
|
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| T |
25125426 |
gttggtctcttatcaactcccaaagtgcagaagctattata |
25125466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 3052615 - 3052679
Alignment:
| Q |
13 |
aaaattagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaa |
79 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
3052615 |
aaaattagagaataaataactattc--tatttatatagtcaagttgttgatatcatatgaaattgaa |
3052679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 6769879 - 6769824
Alignment:
| Q |
17 |
ttagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaa |
74 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||| |
|
|
| T |
6769879 |
ttagagaataaataactattaatta--tatagagtgaagttgttgataacatatgaaa |
6769824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 31458811 - 31458845
Alignment:
| Q |
13 |
aaaattagagaataaataactattaattatttata |
47 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
31458811 |
aaaattagagaataaataactactaattatttata |
31458845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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