View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_101 (Length: 310)
Name: NF11385A_low_101
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_101 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 310
Target Start/End: Original strand, 2466642 - 2466927
Alignment:
| Q |
4 |
attatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccc |
103 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466642 |
attatacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccc |
2466741 |
T |
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| Q |
104 |
accaggcaactatgttggtgaaaagccatactaagtgcatgcttaatagaatgtttcaatttaagctatatatagaaaccataccatatgatggataaat |
203 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
2466742 |
accaggcaact---ttggtgaaaagccatactaagtg----------------tttcactttaagctata--tagaaaccataccatatgatggataaat |
2466820 |
T |
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| Q |
204 |
aaataaataaatggcagggtaaacgtacgtacgtaatgagttcctgactcattatatttatagttatcatatgacatttctcgtattattggagtataat |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
2466821 |
aaataaataaatggcagggtaaacgtacgtacgtaatgagttcctgactcattatatttatagttatcatatgatatttctcatattattggagtataat |
2466920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 4 - 260
Target Start/End: Original strand, 2462594 - 2462832
Alignment:
| Q |
4 |
attatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccc |
103 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462594 |
attatacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccc |
2462693 |
T |
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| Q |
104 |
accaggcaactatgttggtgaaaagccatactaagtgcatgcttaatagaatgtttcaatttaagctatatatagaaaccataccatatgatggataaat |
203 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
2462694 |
accaggcaactatgttggtgaaaagccatactaag----------------tgtttcactttaagc--tatatagaaaccataccatatgatggataaat |
2462775 |
T |
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| Q |
204 |
aaataaataaatggcagggtaaacgtacgtacgtaatgagttcctgactcattatat |
260 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
2462776 |
aaataaataaattgcagggtaaacgtatgtacgtaatgagttcttgactcattatat |
2462832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 3063403 - 3063274
Alignment:
| Q |
4 |
attatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccc |
103 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3063403 |
attatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccc |
3063304 |
T |
|
| Q |
104 |
accaggcaactatgttggtgaaaagccata |
133 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3063303 |
accaggcaactatgttggtgaaaagccata |
3063274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 2458018 - 2458154
Alignment:
| Q |
4 |
attatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccc |
103 |
Q |
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|||| ||||||||||||||||||||| || | ||| |||||||||||||||| |||||| |||||| |||| |||||||||| ||||||||||| || |
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| T |
2458018 |
attacactcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgt---aataatggaggcacattcattatttgcaattacgatcc |
2458114 |
T |
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| Q |
104 |
accaggcaactatgttggtgaaaagccatactaagtgcat |
143 |
Q |
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| T |
2458115 |
accaggcaactatgttggtcaaaagccatactaagtgcat |
2458154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 2469972 - 2470100
Alignment:
| Q |
9 |
actcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccag |
108 |
Q |
| |
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|||||||| |||||||||||| ||||||| |||||||||||||||||| |||| ||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
2469972 |
actcaggtggtttggagaaacacacaacggattggatgtgccaaagtgaaatgt---aataacggaggaacattcattacttgcaattacgacccaccag |
2470068 |
T |
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| Q |
109 |
gcaactatgttggtgaaaagccatactaagtg |
140 |
Q |
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|||||||| |||| |||| |||||||||||| |
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| T |
2470069 |
gcaactatattggcgaaagaccatactaagtg |
2470100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 2474238 - 2474368
Alignment:
| Q |
4 |
attatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccc |
103 |
Q |
| |
|
||||||||||||| |||||||||||| || ||||| |||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||||| |
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| T |
2474238 |
attatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtg---ataatggaggaacattcattacttgcaattacgaccc |
2474334 |
T |
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| Q |
104 |
accaggcaactatgttggtgaaaagccatactaa |
137 |
Q |
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|| ||||||||| |||| |||| ||||||||| |
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| T |
2474335 |
ccctggcaactatattggcgaaagaccatactaa |
2474368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 2471017 - 2471090
Alignment:
| Q |
30 |
tcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
106 |
Q |
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||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||| |||||||| |||||||| |
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| T |
2471017 |
tcacaacgtgttggatgtggcaaagtgagatgtg---ataatggaggcacattcattacttgcaattatgacccacc |
2471090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 2486512 - 2486576
Alignment:
| Q |
4 |
attatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataat |
68 |
Q |
| |
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|||||||||||||||||||| ||| |||| |||||||||||||| |||||||| |||||||||| |
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| T |
2486512 |
attatactcaggttgtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataat |
2486576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 18015917 - 18016046
Alignment:
| Q |
4 |
attatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18015917 |
attatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccc |
18016016 |
T |
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| Q |
104 |
accaggcaactatgttggtgaaaagccata |
133 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
18016017 |
accaggcaactatgttggtgaaaagccata |
18016046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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