View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_109 (Length: 299)

Name: NF11385A_low_109
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_109
NF11385A_low_109
[»] chr3 (2 HSPs)
chr3 (4-293)||(15513433-15513722)
chr3 (30-72)||(15514277-15514319)
[»] chr5 (2 HSPs)
chr5 (223-293)||(9962954-9963024)
chr5 (222-293)||(18398599-18398670)
[»] chr8 (6 HSPs)
chr8 (222-275)||(9030583-9030636)
chr8 (237-293)||(37616265-37616321)
chr8 (192-293)||(8238727-8238828)
chr8 (239-280)||(10340283-10340324)
chr8 (222-278)||(10340211-10340267)
chr8 (224-252)||(36203407-36203435)
[»] chr4 (4 HSPs)
chr4 (239-286)||(43115575-43115622)
chr4 (244-293)||(53449054-53449103)
chr4 (178-293)||(40423307-40423422)
chr4 (222-270)||(40421951-40421999)
[»] chr2 (5 HSPs)
chr2 (222-293)||(12670743-12670814)
chr2 (239-294)||(34557292-34557347)
chr2 (239-293)||(30481661-30481715)
chr2 (239-293)||(33710553-33710607)
chr2 (196-280)||(10633364-10633448)
[»] chr1 (3 HSPs)
chr1 (240-293)||(39126966-39127019)
chr1 (239-293)||(25485009-25485063)
chr1 (217-293)||(34062624-34062700)
[»] scaffold0110 (1 HSPs)
scaffold0110 (237-293)||(31363-31419)
[»] chr7 (5 HSPs)
chr7 (197-252)||(11329505-11329560)
chr7 (179-274)||(25690712-25690807)
chr7 (222-293)||(41195668-41195739)
chr7 (195-293)||(16780773-16780871)
chr7 (222-290)||(30357895-30357963)
[»] chr6 (1 HSPs)
chr6 (239-293)||(33617713-33617767)


Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 4 - 293
Target Start/End: Complemental strand, 15513722 - 15513433
Alignment:
Q  4 gtccattgaaatgccctttccatttccatcaacctaggttgtgatacaaacataatagtagacccttacaaaaataaaacaagggaaagattattgttct 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513722 gtccattgaaatgccctttccatttccatcaacctaggttgtgatacaaacataatagtagacccttacaaaaataaaacaagggaaagattattgttct 15513623  T
Q  104 tcttcctttgagaattactcatttccttaatttaatgtgatttaactcatgttcggcannnnnnnnnnnacaataagttaattcatgctagcacttttaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||           | |||||||||||||||||||||||||||||    
T  15513622 tcttcctttgagaattactcatttccttaatttaatgtgatttaactcacgttcggcatttttttttttataataagttaattcatgctagcacttttaa 15513523  T
Q  204 gatcggctaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 293  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513522 gatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 15513433  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 15514319 - 15514277
Alignment:
Q  30 catcaacctaggttgtgatacaaacataatagtagacccttac 72  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  15514319 catcaacctaggttgcgatacaaacataatagtagacccttac 15514277  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 9962954 - 9963024
Alignment:
Q  223 aaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 293  Q
    |||||||||||| |||||||||||||||||  |||||||||| | ||| ||||||||| ||||||| ||||    
T  9962954 aaaagtgattgaatcaatcttaaaagtgtcattgtgagttaacttacgctgaaaaatgccgaacgtaagtt 9963024  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 18398599 - 18398670
Alignment:
Q  222 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 293  Q
    ||||||||| |||  | |||||||||||||| |||| |||||| |||||||||||||| |||| ||||||||    
T  18398599 aaaaagtgaatgaaccgatcttaaaagtgtcagtgtaagttaactcacgttgaaaaatatcgagcgtgagtt 18398670  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 9030636 - 9030583
Alignment:
Q  222 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaa 275  Q
    ||||||||||||| || |||||||||||||||||||||||||| ||||| ||||    
T  9030636 aaaaagtgattgaatcgatcttaaaagtgtcggtgtgagttaactcacgctgaa 9030583  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 37616321 - 37616265
Alignment:
Q  237 caatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 293  Q
    |||||||||||||||| | |||||||||  |||| ||||||||||||||||||||||    
T  37616321 caatcttaaaagtgtcagcgtgagttaacccacgctgaaaaatgtcgaacgtgagtt 37616265  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 293
Target Start/End: Complemental strand, 8238828 - 8238727
Alignment:
Q  192 tagcacttttaagatcggctaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgag 291  Q
    |||||||||||||||||| | |   ||||||||||||||||||    |||| ||||||||| | ||||||||| |  || |||||||| |||| ||||||    
T  8238828 tagcacttttaagatcggttgatccgactaaaaaagtgattgaactgatctaaaaagtgtcagcgtgagttaactaccgctgaaaaatatcgagcgtgag 8238729  T
Q  292 tt 293  Q
    ||    
T  8238728 tt 8238727  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 10340283 - 10340324
Alignment:
Q  239 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 280  Q
    |||||||||||||| | ||||||||| |||||||||||||||    
T  10340283 atcttaaaagtgtcagcgtgagttaactcacgttgaaaaatg 10340324  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 10340267 - 10340211
Alignment:
Q  222 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaa 278  Q
    ||||| ||||||| || |||| ||||||||| ||||||||||| ||||| |||||||    
T  10340267 aaaaaatgattgaatcgatctaaaaagtgtcagtgtgagttaactcacgctgaaaaa 10340211  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 36203407 - 36203435
Alignment:
Q  224 aaagtgattgagtcaatcttaaaagtgtc 252  Q
    |||||||||||||||||||||||||||||    
T  36203407 aaagtgattgagtcaatcttaaaagtgtc 36203435  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 43115622 - 43115575
Alignment:
Q  239 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaac 286  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||||||    
T  43115622 atcttaaaagtgtcagtgtgagttaactcacgctgaaaaatgtcgaac 43115575  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 53449103 - 53449054
Alignment:
Q  244 aaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 293  Q
    ||||||||||| ||||||||| |||| ||||||||||||||| |||||||    
T  53449103 aaaagtgtcggcgtgagttaactcacattgaaaaatgtcgaatgtgagtt 53449054  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 293
Target Start/End: Original strand, 40423307 - 40423422
Alignment:
Q  178 aagttaattcatgctagcacttttaagatcggctaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaa 277  Q
    ||||||| |||||||  ||||||||||||  | | ||  |||| |||||||||||||  | ||||||||| |||| | ||||||||||||||| | ||||    
T  40423307 aagttaactcatgctgacacttttaagatttgttgaaccgacttaaaaagtgattgaaccgatcttaaaattgtcagcgtgagttaattcacgcttaaaa 40423406  T
Q  278 atgtcgaacgtgagtt 293  Q
    |||  || ||||||||    
T  40423407 atgctgagcgtgagtt 40423422  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 40421951 - 40421999
Alignment:
Q  222 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacg 270  Q
    |||||||||||||   ||||||||||||||| ||||||||||| |||||    
T  40421951 aaaaagtgattgaactaatcttaaaagtgtcagtgtgagttaactcacg 40421999  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 293
Target Start/End: Complemental strand, 12670814 - 12670743
Alignment:
Q  222 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 293  Q
    ||||| |||||||  | |||||||||||||| | ||||||||| |||||||| ||||||||||| |||||||    
T  12670814 aaaaattgattgaaccgatcttaaaagtgtcagcgtgagttaagtcacgttgcaaaatgtcgaatgtgagtt 12670743  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 34557347 - 34557292
Alignment:
Q  239 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagttt 294  Q
    ||||||||||||  |||||||||||| ||||| ||||||||||||| || ||||||    
T  34557347 atcttaaaagtgctggtgtgagttaactcacgctgaaaaatgtcgagcgagagttt 34557292  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 30481715 - 30481661
Alignment:
Q  239 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 293  Q
    |||||||||||| | ||||||||||| ||||| | ||||||||||||| ||||||    
T  30481715 atcttaaaagtgccagtgtgagttaactcacgctaaaaaatgtcgaacatgagtt 30481661  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 33710607 - 33710553
Alignment:
Q  239 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 293  Q
    |||||||||||||| | || |||||| ||||| ||||||||||||||||| ||||    
T  33710607 atcttaaaagtgtcagcgtaagttaactcacgctgaaaaatgtcgaacgtaagtt 33710553  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 280
Target Start/End: Complemental strand, 10633448 - 10633364
Alignment:
Q  196 acttttaagatcggctaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 280  Q
    |||||||||||||| | ||  |||| ||||| ||||||| |||||| | ||||  ||  |||||||||| |||||||||||||||    
T  10633448 acttttaagatcggttgaaacgacttaaaaattgattgaatcaatcctcaaaggatcactgtgagttaactcacgttgaaaaatg 10633364  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 39126966 - 39127019
Alignment:
Q  240 tcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 293  Q
    ||||||||||||| | ||||||||| ||||| ||||||||||||| ||||||||    
T  39126966 tcttaaaagtgtcagcgtgagttaactcacgctgaaaaatgtcgagcgtgagtt 39127019  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 25485009 - 25485063
Alignment:
Q  239 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 293  Q
    |||||||||||| | | ||||||||| ||||| || |||||||||||||||||||    
T  25485009 atcttaaaagtggcagcgtgagttaactcacgctggaaaatgtcgaacgtgagtt 25485063  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 293
Target Start/End: Complemental strand, 34062700 - 34062624
Alignment:
Q  217 gactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 293  Q
    |||| |||||||||||||  | || ||||||||||| | ||||||| | ||||| |||||||||| || ||||||||    
T  34062700 gacttaaaaagtgattgaaccgattttaaaagtgtcagcgtgagttcactcacgctgaaaaatgttgagcgtgagtt 34062624  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 31419 - 31363
Alignment:
Q  237 caatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 293  Q
    ||||||||||| |||  ||||||||||| ||||| ||||||||| ||||||||||||    
T  31419 caatcttaaaaatgtatgtgtgagttaactcacgctgaaaaatgccgaacgtgagtt 31363  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 11329560 - 11329505
Alignment:
Q  197 cttttaagatcggctaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtc 252  Q
    ||||||||||||| ||||  |||| |||||||||| || |||||||||||||||||    
T  11329560 cttttaagatcggttaaaccgacttaaaaagtgatcgaatcaatcttaaaagtgtc 11329505  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 25690807 - 25690712
Alignment:
Q  179 agttaattcatgctagcacttttaagatcggctaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttga 274  Q
    ||||||||||||||  ||||||||||||||| | ||  | || |||||||||||||  | |||| ||||||||| | ||||||||| ||| |||||    
T  25690807 agttaattcatgctgacacttttaagatcggttgaaccggcttaaaaagtgattgaaccgatctaaaaagtgtcagcgtgagttaactcatgttga 25690712  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 293
Target Start/End: Complemental strand, 41195739 - 41195668
Alignment:
Q  222 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 293  Q
    ||||||||||||| |||| |||||||||||| | ||||||||| | ||| | ||||||| ||| ||||||||    
T  41195739 aaaaagtgattgaatcaaccttaaaagtgtcagcgtgagttaactaacgctaaaaaatgccgagcgtgagtt 41195668  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 293
Target Start/End: Original strand, 16780773 - 16780871
Alignment:
Q  195 cacttttaagatcggctaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 293  Q
    ||||||||||||||| | ||  |||| |||||||||||||  | |||||||||||| | | || |||||| ||| | ||||||||||||| | ||||||    
T  16780773 cacttttaagatcggttgaatcgacttaaaaagtgattgaaccgatcttaaaagtgcccgcgtaagttaactcatgctgaaaaatgtcgagcatgagtt 16780871  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 30357895 - 30357963
Alignment:
Q  222 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtga 290  Q
    ||||||||| ||| ||||||| |||||||||||||||| |||  |  || ||||||||| |||||||||    
T  30357895 aaaaagtgagtgaatcaatctaaaaagtgtcggtgtgaattagctaccgatgaaaaatgccgaacgtga 30357963  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 33617713 - 33617767
Alignment:
Q  239 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 293  Q
    ||||||||||| ||| | | ||||||||||||||||||||||||||  |||||||    
T  33617713 atcttaaaagtatcgctatcagttaattcacgttgaaaaatgtcgagtgtgagtt 33617767  T

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