View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11385A_low_11 (Length: 467)
Name: NF11385A_low_11
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 7 - 152
Target Start/End: Complemental strand, 49294341 - 49294196
Alignment:
| Q |
7 |
tttggtgttttattcacacataaagtaaatgaggcaattaaactataatgtgatatagaaggtgtttaaattagtatgagaaccttgaatgcagagatgt |
106 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
49294341 |
tttggtattttactcacacataaagtaaatgaggcaattaaactataatgtgatatagaaggtgtttaaattagcatgagaaccttgaatgcagagatat |
49294242 |
T |
|
| Q |
107 |
catcacaatgtaaaagcccattcaacctaacctgcaaaaatccatg |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49294241 |
catcacaatgtaaaagcccattcaacctaacctgcaaaaatccatg |
49294196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 363 - 464
Target Start/End: Complemental strand, 49293975 - 49293874
Alignment:
| Q |
363 |
ttaagtatatgtagatgtgtgaggaaaacataccgcaagcttgccggagccacggggaccgagaagaagaatagaattgttgcatgcttcagcgacggaa |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49293975 |
ttaagtatatgtagatgtgtgaggaaaacataccgcaagcttgccggagccacggggaccgagaagaagaatagaattgttgcatgcttcagcgacggaa |
49293876 |
T |
|
| Q |
463 |
gt |
464 |
Q |
| |
|
|| |
|
|
| T |
49293875 |
gt |
49293874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 222 - 305
Target Start/End: Complemental strand, 49294116 - 49294033
Alignment:
| Q |
222 |
ggaggcaaggaattaaaaattgaattgaataccactgaaatggagtctggatattgaatcaacaaatcttgaagaactagatcc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49294116 |
ggaggcaaggaattaaaaattgaattgaataccactgaaatggagtctggatattgaatcaacaaatcttgaagaactagatcc |
49294033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University