View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_112 (Length: 297)
Name: NF11385A_low_112
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_112 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 105 - 297
Target Start/End: Complemental strand, 36675179 - 36674991
Alignment:
| Q |
105 |
attcctgaagtacatatatatgtttttaatgaaagcttaaaaagcaaattagtatgacccacctatgatacccactactgttcgagcaatttctgcagta |
204 |
Q |
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| T |
36675179 |
attcctgaagtac----atatgtttttaatgaaagcttaaaaagcaaattagtatgacccacctatgatacccactgctgttcgagcaatttctgcagta |
36675084 |
T |
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| Q |
205 |
ctcatttttcctagattttgcaactgaaattacaaatttgagtctataacactcactcccgattcttgagaatatagtataaactcataaatg |
297 |
Q |
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| T |
36675083 |
ctcatttttcctagattttgcaactgaaattacaaatttgagtctataacactcactctcgattcttgagaatatagtataaacttataaatg |
36674991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 36675272 - 36675229
Alignment:
| Q |
12 |
aagaacatgcagccggcgatgacatttcctgaagtcaagaagga |
55 |
Q |
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| T |
36675272 |
aagaacatgcagccggcgatgacatttcctgaagtcaagaagga |
36675229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 36685354 - 36685311
Alignment:
| Q |
12 |
aagaacatgcagccggcgatgacatttcctgaagtcaagaagga |
55 |
Q |
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| T |
36685354 |
aagaacatgcagccggcgatgacatttcctgaagtcaagaagga |
36685311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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