View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_117 (Length: 294)
Name: NF11385A_low_117
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_117 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 38823037 - 38822754
Alignment:
| Q |
1 |
tatatacatggttttcatttctgtgttgtctgcgtgttaagtggattcaaagcagaagaagcaatgttgagagtctgtcgattacgagttggaatggcga |
100 |
Q |
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| T |
38823037 |
tatatacatggttttcatttctgtgttgtctgcgtgttaagtggattcaaagcagaagaagcaatgttgagagtctgtcgattacgagttggaatggcga |
38822938 |
T |
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| Q |
101 |
ttccaaaactttctgaactttccataattccatcactattctccttctcttttacttcccattctcactcccaaatgcacactttttcctccacaaaaac |
200 |
Q |
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| T |
38822937 |
ttccaaaactttctgaactttccataattccatcactattctccttctcttttacttcccattctcactcccaaatgcacactttttcctccataaaaac |
38822838 |
T |
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| Q |
201 |
cttccattttcactcaccttcttctcttcctctttcaccatttacttttatcatgtctccctatgcaacgagtactcattttct |
284 |
Q |
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| T |
38822837 |
cttccattttcactcaccttcttctcttcctctttcaccatttacttttatcatgtctccctatgcaacgagtactcattttct |
38822754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 49 - 247
Target Start/End: Complemental strand, 38817379 - 38817184
Alignment:
| Q |
49 |
aaagcagaagaagcaatgttgagagtctgtcgattacgagttggaatggcgattccaaaactttctgaactttccataattccatcactattctccttct |
148 |
Q |
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| T |
38817379 |
aaagcagaagaagcaatgttgagagcttgtcaatttcgcgttggattaccgattccaaaactctcttcactttccactattccttcaatcttctctttct |
38817280 |
T |
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| Q |
149 |
cttttacttcccattctcactcccaaatgcacactttttcctccacaaaaaccttccattttcactcaccttcttctcttcctctttcaccatttactt |
247 |
Q |
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| T |
38817279 |
cttttccttcacattctcattccaaaatccacactttttcctacaaaaaacccttccattttcact---ctccttctcttcctctttcaccctttactt |
38817184 |
T |
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