View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_118 (Length: 294)
Name: NF11385A_low_118
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_118 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 53513817 - 53513541
Alignment:
| Q |
13 |
gaaggtggtgagactgtatttcctgatgctaagcccaactttacttctgtatccaaatgttctggagatggtctatcagtgaaaccaaaaatgggcgacg |
112 |
Q |
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| T |
53513817 |
gaaggtggtgagactgtatttcctgatgctcagcccaactttacttctgtatccaaatgttctggagatggtctatcagtgaaaccaaaaatgggcgacg |
53513718 |
T |
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| Q |
113 |
ctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaactattaaaaactgtaaatggttcaaccctaaaata |
212 |
Q |
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| T |
53513717 |
ctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaattattaaaaactgtaaatggttcaaccctaaaata |
53513618 |
T |
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| Q |
213 |
tgcatatatgctctattaaaaacaatcaattgattaatcagttggatccaaatatatattttcttaatgttgaatgt |
289 |
Q |
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| T |
53513617 |
tgcatatatactctattaaaaacaatcaatagattaatcagttggatccaaatatatattttcttaatgttgaatgt |
53513541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 13 - 267
Target Start/End: Complemental strand, 53510208 - 53509954
Alignment:
| Q |
13 |
gaaggtggtgagactgtatttcctgatgctaagcccaactttacttctgtatccaaatgttctggagatggtctatcagtgaaaccaaaaatgggcgacg |
112 |
Q |
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| T |
53510208 |
gaaggtggtgagactgtatttcctaatgctaagcctaacataaattctgtatccaaatatcctgaaaagggtctatcagtgaaaccaaaaatgggtgatg |
53510109 |
T |
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| Q |
113 |
ctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaactattaaaaactgtaaatggttcaaccctaaaata |
212 |
Q |
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| T |
53510108 |
ctctgctgtttcggagcatgaagccagatggcacacttgatacttctagtttacacggttagaatctattaaaaaccgcaactcgttcaactgtaaaata |
53510009 |
T |
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| Q |
213 |
tgcatatatgctctattaaaaacaatcaattgattaatcagttggatccaaatat |
267 |
Q |
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| T |
53510008 |
tgtatacattctctattaaacacaatctatagattaatgagttggatctaaatat |
53509954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 53524117 - 53523948
Alignment:
| Q |
13 |
gaaggtggtgagactgtatttcctgatgctaagcccaactttacttctgtatccaaatgtt---ctggagatggtctatcagtgaaaccaaaaatgggcg |
109 |
Q |
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| T |
53524117 |
gaaggtggtgagactgtatttcctaatgctaagcccaactttaattctgtatccaaatatcatcctggaaagggtttagtagtgaaaccgaaaatgggcg |
53524018 |
T |
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| Q |
110 |
acgctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaact |
179 |
Q |
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| T |
53524017 |
atgctctgctgttttggagcgttaagccagatggctcactagatacagctagcttacatggttagaaact |
53523948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 82 - 201
Target Start/End: Complemental strand, 53547659 - 53547540
Alignment:
| Q |
82 |
ggtctatcagtgaaaccaaaaatgggcgacgctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaactat |
181 |
Q |
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| T |
53547659 |
ggtctatcactgaaaccaaaaatgggtgatgctctgctgttttggagcatgaggccagatgccacactagatgcatccagtttacacggttagggactat |
53547560 |
T |
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| Q |
182 |
taaaaactgtaaatggttca |
201 |
Q |
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| T |
53547559 |
taaatactttaactggttca |
53547540 |
T |
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