View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_119 (Length: 294)
Name: NF11385A_low_119
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_119 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 98 - 275
Target Start/End: Complemental strand, 31225259 - 31225082
Alignment:
| Q |
98 |
acttattatataaatacaaaccctcgtgatctatggtttcatagtttcaaagtatcaagaaaccttccctttgaaacatcattacaacaaaggaattcaa |
197 |
Q |
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| T |
31225259 |
acttattatataaatacaaaccctcgtgatctatggtttcatagtttcaaagtatcaagaaaccttccctttgaaacatcattacaacaaaggaattcaa |
31225160 |
T |
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| Q |
198 |
gaaattccctaaagctaaactccttgtaagacataggatgttgatcatcaacaagttcaagtgctggacctatctttt |
275 |
Q |
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| T |
31225159 |
gaaattccctaaagctaaactccttgtaagacatagggtgttgatcatcaacaagttcaagtgcaggacctatctttt |
31225082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 31225348 - 31225277
Alignment:
| Q |
1 |
gatttcatccacaatttctcccacatccagatttcggttattaaaaagactaacatgtgaaatacatatatt |
72 |
Q |
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| T |
31225348 |
gatttcatccacaatttctcccacatccagatttcggttattaaaaagactaacatgtgaaatacatatatt |
31225277 |
T |
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