View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_12 (Length: 466)
Name: NF11385A_low_12
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 383
Target Start/End: Complemental strand, 13881902 - 13881527
Alignment:
| Q |
7 |
tttcgagttgtataattagtgtataattagcacagttacctttcattcagtatgattgtactctactaaaattataatgtctaaattatacccttatata |
106 |
Q |
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| T |
13881902 |
tttcaagttgtataattattgtataattagcacagttacctttcattcagtatgattgtactctactaaaattataatgtctaaattatacccttatata |
13881803 |
T |
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| Q |
107 |
aacttgggaaagatgatacgtaaacttgttaaacaggttaaattgttaaagccataagttcctctttttatgaaattggtaccattcattctttctgaca |
206 |
Q |
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| T |
13881802 |
aacttgggaaagatgatacataaacttgttaaacaggttaaattgttaaagccataagttcctctttttatgacattggtaccattcattctttctgaca |
13881703 |
T |
|
| Q |
207 |
cttaatgcgtgtacttctatttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaactt |
306 |
Q |
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| T |
13881702 |
cttaatgtatgtacttctatttcagcttcaagatgctgtgactgatgagatggatattaagcttcttcaactatatgcatatg-aaaatcaataaaactt |
13881604 |
T |
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| Q |
307 |
gaaaagtttgtcgatatagtttaccacataaatgcttgtgttctacccgattagaacatatatcgtattgaatatgc |
383 |
Q |
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| T |
13881603 |
gaaaagtttgtcgatatagtttaccacgaaaatgcttgtgttctacacgattagaacatatatcgtattgaatatgc |
13881527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 127 - 382
Target Start/End: Complemental strand, 16022693 - 16022434
Alignment:
| Q |
127 |
taaacttgttaaacaggttaaattgttaaagccataag-ttcctctttttatgaaattggtaccattcattctttctgacacttaatgcgtgtacttcta |
225 |
Q |
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| T |
16022693 |
taaacttgttaaacaggttaaatgcataaagccataaaattcctctttttataagcttgatgtcattcattctttctgacccttcaattatgtactccta |
16022594 |
T |
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| Q |
226 |
tttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatag |
325 |
Q |
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||||||||||||| || || || ||||||||||||||||||||| | |||||||||||||||||| ||||||| ||||| || ||||||||||||||||| |
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| T |
16022593 |
tttcagcttcaagctgttgcgagtgatgagatggataataagctgcttcaactatatgcatatgagaaatcaagaaaacctggaaagtttgtcgatatag |
16022494 |
T |
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| Q |
326 |
tttaccacataaatgcttgtgttctaccc---gattagaacatatatcgtattgaatatg |
382 |
Q |
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| T |
16022493 |
tttatcacgaaaatgctcgtgttcttcttcatgatgagaacatatatcgtattgaatatg |
16022434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 180 - 383
Target Start/End: Original strand, 14389487 - 14389688
Alignment:
| Q |
180 |
aattggtaccattcattctttctgacacttaatgcgtgtacttctatttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaacta |
279 |
Q |
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||||||||||||| ||| ||||||||||| || | |||||| |||| ||||||| | || || || || || ||||||||||||||||| ||||||| |
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| T |
14389487 |
aattggtaccattaattttttctgacactgaaagtatgtactcttatt--agcttcacgctgttgcgagtggtgggatggataataagcttcttcaacta |
14389584 |
T |
|
| Q |
280 |
tatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgcttgtgttctacccgattagaacatatatcgtattgaat |
379 |
Q |
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| T |
14389585 |
tatgcatttgacaaatcaagaaagcttggaaagtttgttgatatagtttatcacgaaaattctcgtgttcttcatgatgagaacatatactgtattgaat |
14389684 |
T |
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| Q |
380 |
atgc |
383 |
Q |
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|||| |
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| T |
14389685 |
atgc |
14389688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 414 - 460
Target Start/End: Complemental strand, 13881506 - 13881460
Alignment:
| Q |
414 |
catttgaagtttgactcttgcctatttaaatatgctcctggagtttt |
460 |
Q |
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| T |
13881506 |
catttgaagtttgactcttgcctatttaaatatgctcctggagtttt |
13881460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 329
Target Start/End: Original strand, 48707228 - 48707308
Alignment:
| Q |
249 |
tgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagttta |
329 |
Q |
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| T |
48707228 |
tgatgagatggttaataagcttcttcaactaaatgcataccagaaatcaagaaaacttggaaagcttgttgatatagttta |
48707308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 26200174 - 26200118
Alignment:
| Q |
247 |
actgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaa |
303 |
Q |
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| T |
26200174 |
actgatgagatggataacaaacttcttcaactatatgcatatgaacaatcaagaaaa |
26200118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 29623333 - 29623277
Alignment:
| Q |
247 |
actgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaa |
303 |
Q |
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||||||||||||||||| || |||| |||||||||||||| |||| |||||| |||| |
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| T |
29623333 |
actgatgagatggataacaaacttcttcaactatatgcatgtgaacaatcaagaaaa |
29623277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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