View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_122 (Length: 291)

Name: NF11385A_low_122
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_122
NF11385A_low_122
[»] chr1 (4 HSPs)
chr1 (8-271)||(29467152-29467415)
chr1 (40-273)||(29452676-29452909)
chr1 (39-270)||(29423804-29424035)
chr1 (56-273)||(29442684-29442901)
[»] chr2 (9 HSPs)
chr2 (39-272)||(14550910-14551143)
chr2 (39-141)||(12005616-12005718)
chr2 (39-140)||(12018381-12018482)
chr2 (56-141)||(11986979-11987064)
chr2 (43-138)||(12012047-12012142)
chr2 (217-272)||(8572827-8572882)
chr2 (63-97)||(8579035-8579069)
chr2 (63-96)||(9365209-9365242)
chr2 (220-272)||(9292699-9292751)
[»] chr4 (1 HSPs)
chr4 (53-93)||(55718336-55718376)


Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 271
Target Start/End: Complemental strand, 29467415 - 29467152
Alignment:
Q  8 atggtgttaggtttagaaagagcaggagtttgaatagggaggttaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattgg 107  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  29467415 atggtgttaggtttagaaagagcaggagtttgaatagggagattaggaataatccgatgtttacggatgttaggattccagaaagcgattccgacattga 29467316  T
Q  108 tggaaatgcagagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttaga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467315 tggaaatgcagagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttaga 29467216  T
Q  208 gaaatcgttgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattt 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467215 gaaatcgttgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattt 29467152  T

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Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 40 - 273
Target Start/End: Complemental strand, 29452909 - 29452676
Alignment:
Q  40 aatagggaggttaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaaccg 139  Q
    ||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |    
T  29452909 aatagggagattaggaatattctgatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaactg 29452810  T
Q  140 aacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgt 239  Q
    ||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  29452809 aacagagagatgttgttgttggggagtttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaaacagagttgt 29452710  T
Q  240 gtcgaaggattaagaaacgattgagggaattttg 273  Q
    |||||||||||||| |||||||||||||||||||    
T  29452709 gtcgaaggattaaggaacgattgagggaattttg 29452676  T

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Target: chr1; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 39 - 270
Target Start/End: Original strand, 29423804 - 29424035
Alignment:
Q  39 gaatagggaggttaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaacc 138  Q
    |||||||||||  ||| |||||  ||||||||| |||| |||| ||||||||||||||| |  ||| || | | | ||||||||||||||||||||| ||    
T  29423804 gaatagggagggaagggataatgcgatgtttacagatggtagggttccagaaagcgatttcaccatcggagaagaggcagagaaggccgttacatgatcc 29423903  T
Q  139 gaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttg 238  Q
    || |||||||||||||||||||| |  |||||||||| |||||||||||| |  ||| ||||||||||||||||||||||||||||||||||| ||||||    
T  29423904 gaccagagagatgaagttgttggagcctttgaaaggaggattgagtttaacggcggtagttaggttagagaaatcgttgatttggtagaaatcagagttg 29424003  T
Q  239 tgtcgaaggattaagaaacgattgagggaatt 270  Q
    ||||||||||||||| ||||||||| ||||||    
T  29424004 tgtcgaaggattaaggaacgattgaaggaatt 29424035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 56 - 273
Target Start/End: Complemental strand, 29442901 - 29442684
Alignment:
Q  56 ataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaaccgaacagagagatgaagt 155  Q
    |||||| | ||||||||||||||||| |||||||||||||||||  |||||| |||||||||||||||||||||||||||||| |  ||||| |||  ||    
T  29442901 ataatccggtgtttacggatgttagggttccagaaagcgattccagcattggaggaaatgcagagaaggccgttacatgaacctagaagagacatgcggt 29442802  T
Q  156 tgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgtgtcgaaggattaagaa 255  Q
    || ||||   | |||||||||  |||||||||| || ||||||||||||||||||||| | |||||||||||||||  |||||||||||||||||||| |    
T  29442801 tgatgggacctgtgaaaggaatgttgagtttaacgccggtggttaggttagagaaatcttcgatttggtagaaatcaaagttgtgtcgaaggattaagga 29442702  T
Q  256 acgattgagggaattttg 273  Q
    |||||||||| |||||||    
T  29442701 acgattgaggaaattttg 29442684  T

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Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 39 - 272
Target Start/End: Original strand, 14550910 - 14551143
Alignment:
Q  39 gaatagggaggttaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaacc 138  Q
    |||||||||| | ||| |||||  ||||||||||||||||||| ||||| ||||| ||| || ||||||   | ||| ||||||| ||||||||||||||    
T  14550910 gaatagggagatcagggataatgcgatgtttacggatgttagggttccataaagcaatttcgccattggaaaagatgtagagaagaccgttacatgaacc 14551009  T
Q  139 gaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttg 238  Q
    || |||||||||||||||||||  |  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||    
T  14551010 gagcagagagatgaagttgttgaagccttcgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagagattggacttg 14551109  T
Q  239 tgtcgaaggattaagaaacgattgagggaatttt 272  Q
    ||||||||||||||| ||| ||||||||||||||    
T  14551110 tgtcgaaggattaaggaacaattgagggaatttt 14551143  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 141
Target Start/End: Complemental strand, 12005718 - 12005616
Alignment:
Q  39 gaatagggaggttaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaacc 138  Q
    |||||||||| ||||| |||||| ||||||||||||||||||| |||||||||| |||| || | |||| |||||||||||| |||||||||||||||||    
T  12005718 gaatagggagattagggataatccgatgtttacggatgttagggttccagaaagtgatttcggctttggaggaaatgcagaggaggccgttacatgaacc 12005619  T
Q  139 gaa 141  Q
    |||    
T  12005618 gaa 12005616  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 12018482 - 12018381
Alignment:
Q  39 gaatagggaggttaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaacc 138  Q
    |||||||||| | ||| |||||| ||||||||||||||| ||| ||||||||||||||| ||   |||| |||||||||||| |||||||||||||||||    
T  12018482 gaatagggagatgagggataatccgatgtttacggatgtaagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaacc 12018383  T
Q  139 ga 140  Q
    ||    
T  12018382 ga 12018381  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 11987064 - 11986979
Alignment:
Q  56 ataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaaccgaa 141  Q
    |||||| ||||||||||| ||||||| ||||||||||||||| ||   |||| |||||||||||| ||||||||||||||||||||    
T  11987064 ataatccgatgtttacgggtgttagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaaccgaa 11986979  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 12012142 - 12012047
Alignment:
Q  43 agggaggttaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaacc 138  Q
    |||||| ||||| |||||||||||||||||||||||||| |||||||| ||| || ||   || | |||||||||||  |||||||||||||||||    
T  12012142 agggagattagggataatctgatgtttacggatgttagggttccagaacgcggtttcggtgtttgaggaaatgcagatgaggccgttacatgaacc 12012047  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 8572882 - 8572827
Alignment:
Q  217 gatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttt 272  Q
    ||||||||||| |||| ||||| |||||| ||||||| ||||||||||||||||||    
T  8572882 gatttggtagatatcgtagttgcgtcgaatgattaaggaacgattgagggaatttt 8572827  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 97
Target Start/End: Complemental strand, 8579069 - 8579035
Alignment:
Q  63 gatgtttacggatgttaggattccagaaagcgatt 97  Q
    ||||||||||||||||||| |||||||||||||||    
T  8579069 gatgtttacggatgttagggttccagaaagcgatt 8579035  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Original strand, 9365209 - 9365242
Alignment:
Q  63 gatgtttacggatgttaggattccagaaagcgat 96  Q
    ||||||||||||||||||| ||||||||||||||    
T  9365209 gatgtttacggatgttagggttccagaaagcgat 9365242  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 9292699 - 9292751
Alignment:
Q  220 ttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttt 272  Q
    |||||||| |||| | |||||||||||||||||| | || |||||||||||||    
T  9292699 ttggtagagatcgaatttgtgtcgaaggattaaggatcggttgagggaatttt 9292751  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 55718336 - 55718376
Alignment:
Q  53 ggaataatctgatgtttacggatgttaggattccagaaagc 93  Q
    ||||||||| |||||||||||||  ||||||||||||||||    
T  55718336 ggaataatccgatgtttacggatcgtaggattccagaaagc 55718376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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