View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_13 (Length: 454)

Name: NF11385A_low_13
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_13
NF11385A_low_13
[»] chr4 (5 HSPs)
chr4 (7-225)||(9944166-9944384)
chr4 (33-139)||(19695118-19695224)
chr4 (33-139)||(19705703-19705809)
chr4 (301-420)||(19695388-19695507)
chr4 (301-420)||(19705973-19706092)
[»] chr8 (4 HSPs)
chr8 (28-133)||(29921634-29921739)
chr8 (33-392)||(3343149-3343510)
chr8 (302-448)||(29921331-29921477)
chr8 (65-119)||(26358571-26358625)
[»] scaffold1171 (1 HSPs)
scaffold1171 (33-139)||(134-240)
[»] scaffold0250 (2 HSPs)
scaffold0250 (33-133)||(25201-25301)
scaffold0250 (301-392)||(24940-25031)
[»] chr2 (3 HSPs)
chr2 (33-133)||(17099120-17099220)
chr2 (301-392)||(17099390-17099481)
chr2 (301-389)||(26071919-26072007)
[»] chr1 (2 HSPs)
chr1 (33-133)||(20590372-20590472)
chr1 (301-415)||(20590088-20590202)
[»] chr3 (2 HSPs)
chr3 (33-229)||(11332537-11332735)
chr3 (33-416)||(14767073-14767458)
[»] scaffold0008 (1 HSPs)
scaffold0008 (54-119)||(271654-271719)
[»] chr5 (2 HSPs)
chr5 (54-119)||(180543-180608)
chr5 (301-389)||(180792-180880)
[»] chr6 (2 HSPs)
chr6 (61-119)||(20895060-20895118)
chr6 (301-389)||(20894788-20894876)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 9944166 - 9944384
Alignment:
Q  7 gagttatgttgagtcacattaagatttatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaatta 106  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9944166 gagttatgttgagtcactttaagctttgtagggctaagaataaggcttcggaactgattcatggtggaatagatgagaaatattctcatcttagaaatta 9944265  T
Q  107 tgctgaggaattgatgaggagtaatccaggtagcactgataggattaaatgtgcagttggagatgcagggccagtgtttgaaaggatatgtatgctttaa 206  Q
    || ||||||||||||||||| |||| | ||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9944266 tgttgaggaattgatgaggattaattcgggtagcattgttaggattaaatgtgcagttggagatgcaggaccagtgtttgaaaggatatgtatgctttaa 9944365  T
Q  207 tgcatgcaagagggaattt 225  Q
    |||||||||||||| ||||    
T  9944366 tgcatgcaagagggcattt 9944384  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 19695118 - 19695224
Alignment:
Q  33 tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc 132  Q
    |||||||||||||| |||||||| ||||| || |||||||  |||||||| |||||| |  ||||  |||| ||||||||||||||| ||||||| ||||    
T  19695118 tatagggctaagaagaaggctttagaacttatccatggtgccatagatgaacaatatgcatatctgtgaaactatgctgaggaattgttgaggagcaatc 19695217  T
Q  133 caggtag 139  Q
    | |||||    
T  19695218 ctggtag 19695224  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 19705703 - 19705809
Alignment:
Q  33 tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc 132  Q
    |||||||||||||| |||||||| ||||| || |||||||  |||||||| |||||| |  ||||  |||| ||||||||||||||| ||||||| ||||    
T  19705703 tatagggctaagaagaaggctttagaacttatccatggtgccatagatgaacaatatgcatatctgtgaaactatgctgaggaattgttgaggagcaatc 19705802  T
Q  133 caggtag 139  Q
    | |||||    
T  19705803 ctggtag 19705809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 420
Target Start/End: Original strand, 19695388 - 19695507
Alignment:
Q  301 gcaattgggaaagatgggaacaaccagatgctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttcttgaccttcttt 400  Q
    |||||| |||||||||  ||||| || ||| | || |||||||||| | |||| |||||| ||||||||||| ||||||| |||||||  || ||  | |    
T  19695388 gcaattaggaaagatgacaacaatcaaatgttaccaattgcatttgcagtagtggaagctgaaacaaaggatgcatgggactggtttccggaactgttat 19695487  T
Q  401 tgggtgacttgaatggtatt 420  Q
    ||||||||||||||||||||    
T  19695488 tgggtgacttgaatggtatt 19695507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 420
Target Start/End: Original strand, 19705973 - 19706092
Alignment:
Q  301 gcaattgggaaagatgggaacaaccagatgctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttcttgaccttcttt 400  Q
    |||||| |||||||||  ||||| || ||| | || |||||||||| | |||| |||||| ||||||||||| ||||||| |||||||  || ||  | |    
T  19705973 gcaattaggaaagatgacaacaatcaaatgttaccaattgcatttgcagtagtggaagctgaaacaaaggatgcatgggactggtttccggaactgttat 19706072  T
Q  401 tgggtgacttgaatggtatt 420  Q
    ||||||||||||||||||||    
T  19706073 tgggtgacttgaatggtatt 19706092  T

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Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 29921739 - 29921634
Alignment:
Q  28 agatttatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggag 127  Q
    |||| |||||||||||||| ||||||||  |||| || ||||||| |||||||||||||||| ||||||| |||||||||||||| ||||||||||||||    
T  29921739 agatatatagggctaagaagaaggctttaaaacttatccatggtgcaatagatgagcaatatgctcatctcagaaattatgctgaagaattgatgaggag 29921640  T
Q  128 taatcc 133  Q
    ||||||    
T  29921639 taatcc 29921634  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 33 - 392
Target Start/End: Complemental strand, 3343510 - 3343149
Alignment:
Q  33 tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc 132  Q
    |||||||||||||| |||||||| ||||| || |||||||  ||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||| ||||    
T  3343510 tatagggctaagaagaaggctttagaacttatccatggtgccatagatgagcaatattcgcatctgagaaactatgctgaggaattgttgaggagcaatc 3343411  T
Q  133 caggtagcactgataggattaaatgtgcagttggagatgcagggccagtgtttgaaag--gatatgtatgctttaatgcatgcaagagggaatttgcaat 230  Q
    | || |||| || |  |||||| |||  || | | ||||| ||||| || ||||| ||   |||||| || ||| |||| |||||||||| ||||||||     
T  3343410 ctggaagcagtgttttgattaagtgtaaagatagtgatgctgggcctgtttttgagagaatatatgtttgtttttatgcttgcaagagggcatttgcaac 3343311  T
Q  231 aacctgtatgcccttgatcagccttgacgtatgcttttaaaaaggcatgtatgttggacaccttttggctgcaattgggaaagatgggaacaaccagatg 330  Q
     || ||||  || || ||  | || || |  || ||||  ||||| |   |||  |||||| | || || ||||||||||||||||| ||||| || |||    
T  3343310 tacttgtagaccattaattggtctagatgggtgttttttgaaaggaagagatggaggacacttattagcagcaattgggaaagatggcaacaatcaaatg 3343211  T
Q  331 ctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttcttga 392  Q
     | || |||||||||| | |||| |||||| | ||||||||||||||||| | |||||||||    
T  3343210 ttaccaattgcatttgcagtagtggaagctgagacaaaggattcatgggactagtttcttga 3343149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 302 - 448
Target Start/End: Complemental strand, 29921477 - 29921331
Alignment:
Q  302 caattgggaaagatgggaacaaccagatgctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttcttgaccttctttt 401  Q
    ||||||||||||||| ||| || || | |||||| | |||||||| | ||||||||| | ||||||||||  |||| || ||||||||||| ||||| ||    
T  29921477 caattgggaaagatgagaataatcaaacgctgccaaatgcatttgcagtagtagaagttgaaacaaaggaagcatgagactggtttcttgatcttctatt 29921378  T
Q  402 gggtgacttgaatggtattcaagcaaagaagcggtctttcatctcag 448  Q
    |  | | |||||||| ||||||||||| ||| |||||||||| ||||    
T  29921377 gactaatttgaatggcattcaagcaaaaaagtggtctttcatatcag 29921331  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 26358571 - 26358625
Alignment:
Q  65 tcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattg 119  Q
    ||||||||  ||||||||||||||| |||||||||  ||||||||||||||||||    
T  26358571 tcatggtgctatagatgagcaatatgctcatcttaagaattatgctgaggaattg 26358625  T

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Target: scaffold1171 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold1171
Description:

Target: scaffold1171; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 240 - 134
Alignment:
Q  33 tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc 132  Q
    |||||||||||||| |||||||| ||||| || |||||||| ||||||||||||||| | ||||| ||||| ||||||||||||||| ||||||| ||||    
T  240 tatagggctaagaagaaggctttagaacttatccatggtggcatagatgagcaatatgcgcatctgagaaactatgctgaggaattgttgaggagcaatc 141  T
Q  133 caggtag 139  Q
    | |||||    
T  140 ctggtag 134  T

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Target: scaffold0250 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 25301 - 25201
Alignment:
Q  33 tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc 132  Q
    |||||||||||||| |||||||| ||||| || |||||||  ||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||| ||||    
T  25301 tatagggctaagaagaaggctttagaacttatccatggtgccatagatgagcaatattcgcatctgagaaactatgctgaggaattgttgaggagcaatc 25202  T
Q  133 c 133  Q
    |    
T  25201 c 25201  T

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Target: scaffold0250; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 25031 - 24940
Alignment:
Q  301 gcaattgggaaagatgggaacaaccagatgctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttcttga 392  Q
    ||||||||||||||||| ||||| || ||| | || |||||||||| | |||| |||||| | ||||||||||||||||| | |||||||||    
T  25031 gcaattgggaaagatggcaacaatcaaatgttaccaattgcatttgcagtagtggaagctgagacaaaggattcatgggacttgtttcttga 24940  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 17099120 - 17099220
Alignment:
Q  33 tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc 132  Q
    |||||||||||||| |||||||| ||||| || |||||||  ||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||| ||||    
T  17099120 tatagggctaagaagaaggctttagaacttatccatggtgccatagatgagcaatattcgcatctgagaaactatgctgaggaattgttgaggagcaatc 17099219  T
Q  133 c 133  Q
    |    
T  17099220 c 17099220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 301 - 392
Target Start/End: Original strand, 17099390 - 17099481
Alignment:
Q  301 gcaattgggaaagatgggaacaaccagatgctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttcttga 392  Q
    ||||||||||||||||| ||||| || ||| | || |||||||||| | |||| |||||| | ||||||||||||||||| |||||||||||    
T  17099390 gcaattgggaaagatggcaacaatcaaatgttaccaattgcatttgcagtagtggaagctgagacaaaggattcatgggactggtttcttga 17099481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 389
Target Start/End: Complemental strand, 26072007 - 26071919
Alignment:
Q  301 gcaattgggaaagatgggaacaaccagatgctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttct 389  Q
    |||||||| ||||||||||| || |||||| |||| ||||||||||   | || || ||| |||| ||||| || ||||||||||||||    
T  26072007 gcaattggtaaagatgggaataatcagatgatgcccattgcatttgctgttgtggaggctgaaaccaaggaatcttgggattggtttct 26071919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 20590472 - 20590372
Alignment:
Q  33 tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc 132  Q
    |||||||||||||| |||||||| ||||| || |||||||| ||||||||||||||| | ||||| ||||| ||||||||||||||| ||||||| ||||    
T  20590472 tatagggctaagaagaaggctttagaacttatccatggtggcatagatgagcaatatgcgcatctgagaaactatgctgaggaattgttgaggagcaatc 20590373  T
Q  133 c 133  Q
    |    
T  20590372 c 20590372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 20590202 - 20590088
Alignment:
Q  301 gcaattgggaaagatgggaacaaccagatgctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttcttgaccttcttt 400  Q
    ||||||||||||||||| ||||| || ||| | || |||||||||| | |||| |||||| ||||||||||| ||||||| |||||||| || ||  | |    
T  20590202 gcaattgggaaagatggtaacaatcaaatgttaccaattgcatttgcagtagtggaagcttaaacaaaggatgcatgggactggtttctggaactgttat 20590103  T
Q  401 tgggtgacttgaatg 415  Q
    |||||||||||||||    
T  20590102 tgggtgacttgaatg 20590088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 229
Target Start/End: Complemental strand, 11332735 - 11332537
Alignment:
Q  33 tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc 132  Q
    |||||||||||||| |||| |||||| || || |||||||  ||||||||||||||| | ||| | ||| |||||||| ||||||| | |||||| |||     
T  11332735 tatagggctaagaagaaggatttggagcttatacatggtgccatagatgagcaatatgcgcatatgagatattatgctaaggaatttaggaggagcaatt 11332636  T
Q  133 caggtagcactgataggattaaatgtgcagttggagatgcagggccagtgtttgaaagga--tatgtatgctttaatgcatgcaagagggaatttgcaa 229  Q
    | ||||||||||  | |||||| |||||| | || |||| ||| ||||| ||| |||| |  ||||| |||||  |||||||||||| || ||||||||    
T  11332635 ctggtagcactgtgaagattaagtgtgcattaggtgatggaggaccagttttttaaagaatgtatgtgtgcttctatgcatgcaagatggcatttgcaa 11332537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 33 - 416
Target Start/End: Original strand, 14767073 - 14767458
Alignment:
Q  33 tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc 132  Q
    |||||| ||||||| |||||||||||||| || |||||||  |||||||||||||||   ||| | | ||| |||||| |||||||| ||||||| ||||    
T  14767073 tataggactaagaagaaggctttggaacttatccatggtgccatagatgagcaatatgtgcatttgaaaaactatgctaaggaattgttgaggagcaatc 14767172  T
Q  133 caggtagcactgataggattaaatgtgcagttggagatgcagggccagtgtttgaaag--gatatgtatgctttaatgcatgcaagagggaatttgcaat 230  Q
    |   ||||| ||  | |||||| ||||| | | | ||||  |||||||| ||  ||||   |||||| || ||| ||||||||||||||| ||||||||     
T  14767173 ctaatagcagtgtgaagattaagtgtgctgatagtgatgttgggccagttttccaaagaatatatgtgtgtttttatgcatgcaagagggcatttgcaac 14767272  T
Q  231 aacctgtatgcccttgatcagccttgacgtatgcttttaaaaaggcatgtatgttggacaccttttggctgcaattgggaaagatgggaacaaccagatg 330  Q
     || |||| ||| || || || || || |  || |||   ||||| |   |||  |||||| | || || ||||||| ||||||||| ||||| || |||    
T  14767273 tacttgtaggccattaattagtctagatgggtgttttctgaaaggaagagatgggggacacttattagcagcaattgagaaagatggaaacaatcaaatg 14767372  T
Q  331 ctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttcttgaccttcttttgggtgacttgaatgg 416  Q
     | || |||||||||| | ||||||||||| ||||||||||  |||| || | ||||||||| ||  | |||| ||||||||||||    
T  14767373 ttaccaattgcatttgcagtagtagaagctgaaacaaaggaagcatgagactcgtttcttgaactgttattggctgacttgaatgg 14767458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 271719 - 271654
Alignment:
Q  54 ttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattg 119  Q
    |||||| ||||||||||||  ||||||||||||||| |||||||||| ||||||||||||||||||    
T  271719 ttggaaatgattcatggtgctatagatgagcaatatgctcatcttaggaattatgctgaggaattg 271654  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 180543 - 180608
Alignment:
Q  54 ttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattg 119  Q
    |||||| ||||||||||||  ||||||||||||||| |||||||||| ||||||||||||||||||    
T  180543 ttggaaatgattcatggtgctatagatgagcaatatgctcatcttaggaattatgctgaggaattg 180608  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 389
Target Start/End: Original strand, 180792 - 180880
Alignment:
Q  301 gcaattgggaaagatgggaacaaccagatgctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttct 389  Q
    |||||||| ||||||||||| || |||||| |||| ||||||||||   | || || ||| |||| ||||| || ||||||||||||||    
T  180792 gcaattggtaaagatgggaataatcagatgatgcccattgcatttgctgttgtggaggctgaaaccaaggaatcttgggattggtttct 180880  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 20895118 - 20895060
Alignment:
Q  61 tgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattg 119  Q
    ||||||||||||  ||||||||||||||| |||||||||| ||||||||||||||||||    
T  20895118 tgattcatggtgctatagatgagcaatatgctcatcttaggaattatgctgaggaattg 20895060  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 389
Target Start/End: Complemental strand, 20894876 - 20894788
Alignment:
Q  301 gcaattgggaaagatgggaacaaccagatgctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttct 389  Q
    |||||||| ||||||||||| || |||||| |||| |||||||||||  | || || ||| |||| ||||| || |||||||| |||||    
T  20894876 gcaattggtaaagatgggaataatcagatgatgcccattgcatttgttgttgtggaggctgaaaccaaggaatcttgggattgttttct 20894788  T

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