View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11385A_low_135 (Length: 279)
Name: NF11385A_low_135
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_135 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 41760490 - 41760737
Alignment:
| Q |
16 |
atgccgaagcagaggaagaaatagaaattaaagcatgttctacagaagtcgaagaaaatattgaaaatataattttcatagacgaagaacaaggagaaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41760490 |
atgccgaagcagaggaagaaatagaaattaaagcatgttctacagaagtcgaagaaaatattgaaaatataattttcatagacgaagaacaaggagaaga |
41760589 |
T |
|
| Q |
116 |
agttgaactacttgatgcacatgatgacgagggagataaattgtcggaaattgattacattctaatcgaagaaaacaacatagaggaagaggagcat--- |
212 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
41760590 |
agttgaactatttgatgcacatgatgatgagggagataaattgtcggaaattgattacattctaattgaagaaaacaacatagaagaagaggagcatgaa |
41760689 |
T |
|
| Q |
213 |
gaagaagatgaagaatattatgtagaagaagaaagttgtgtgctaagt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41760690 |
gaagaagatgaagaatattatgtagaagaagaaagttgtgtgctaagt |
41760737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 41795385 - 41795502
Alignment:
| Q |
110 |
agaagaagttgaactacttgatgcacatgatgacgagggagataaattgtcggaaattgattacattctaatcgaagaaaacaacatagaggaagaggag |
209 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||| || ||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
41795385 |
agaagaagttgaactatttgatgcagatgatgaagacggagataaagggtcggaaattgattacattctaattgaagaaaacaacatagaagaagaggag |
41795484 |
T |
|
| Q |
210 |
catgaagaagatgaagaa |
227 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
41795485 |
catgaagaagaagaagaa |
41795502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University