View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_140 (Length: 276)
Name: NF11385A_low_140
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_140 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 26573260 - 26573509
Alignment:
| Q |
7 |
gatactacaaccataggcgaaaggacagttcgtttgcnnnnnnnnnntgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgca |
106 |
Q |
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| T |
26573260 |
gatactacaaccataggcgaaaggacagttcttttgcaaaaaaaaa-tgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgca |
26573358 |
T |
|
| Q |
107 |
taagaaacaaacaaacatcctataattcacttataaatatgaaataaagggatagacagttgcttaaaacgaagcattacccatcacagttgcaattcaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26573359 |
taagaaacaaacaaacatcctataattcacttataaatatgaaataaagggatagacagttgcttaaaacgaagcattacccatcacagttgcaattcaa |
26573458 |
T |
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| Q |
207 |
ctcaaagtaatgcaatactaatgtttatcacagtattatctttcaacttgat |
258 |
Q |
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| T |
26573459 |
ctcaaagtaatgcaaaactaatgcttatcacagta-tatctttcaacttgat |
26573509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 6e-77; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 10350541 - 10350791
Alignment:
| Q |
1 |
tcaaatgatactacaaccataggcgaaaggacagttcgtttgcnnnnnnnnnntgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaa |
100 |
Q |
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| T |
10350541 |
tcaaatgatactacaaccataggcgaacggacagttcttttgcaaaaaat---tgaaatgatttacaaaagagaacccagaaaggctgcagcaaatagaa |
10350637 |
T |
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| Q |
101 |
aatgcataagaaacaaacaaacatcctataattcacttataaatatgaaataaagggatagacagttgcttaaaacgaagcattacccatcacagttgca |
200 |
Q |
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| T |
10350638 |
aatgcataagaatcaaa----catcctataattcacttataaatatgaaataaagggatacacagttgcttaaaacttagtatcacccatcacagttgca |
10350733 |
T |
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| Q |
201 |
attcaactcaaagtaatgcaatactaatgtttatcacagtattatctttcaacttgat |
258 |
Q |
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| T |
10350734 |
attcaactcaaagtaatggaatactaatgcttatcacagtattctctttcaacttgat |
10350791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 10346100 - 10346250
Alignment:
| Q |
54 |
tgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaacatcctataattcacttataaatatgaaataa |
153 |
Q |
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|||||| |||||||||||||||| ||||| | | ||||| ||||||||||||| ||||||||||| | ||||||||||||| ||| |||||| ||||| |
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| T |
10346100 |
tgaaattatttacaaaagagaaccaagaaaagatgaagcaaatagaaaatgcatcagaaacaaacaga--tcctataattcacgtattaatatggaataa |
10346197 |
T |
|
| Q |
154 |
agggatagacagttgcttaaaacgaagcattacccatcacagttgcaattcaa |
206 |
Q |
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| T |
10346198 |
agggagacgcagttgcttaaaacgaagcattacccatcacagttgcaattcaa |
10346250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 10339596 - 10339724
Alignment:
| Q |
1 |
tcaaatgatactacaaccataggcgaaaggacagttcgtttgcnnnnnnnnnntgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaa |
100 |
Q |
| |
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| T |
10339596 |
tcaaatgatactacagccataggtgaaaggacagttattttgcaaaaaaat--tgaaatgatttacaaaagagaacccagaaaggctaaagcaaatagaa |
10339693 |
T |
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| Q |
101 |
aatgcataagaaacaaacaaacatcctataa |
131 |
Q |
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| T |
10339694 |
aatgcataagaaacaaacaaaaatcctataa |
10339724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 10370364 - 10370438
Alignment:
| Q |
164 |
agttgcttaaaacgaagcattacccatcacagttgcaattcaactcaaagtaatgcaatactaatgtttatcaca |
238 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || | ||||| |||||||| |
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| T |
10370364 |
agttgcttaaaacaaagcattacccatcacagttgcaattcaactcaaactaatacagcattaatgcttatcaca |
10370438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 10339902 - 10339943
Alignment:
| Q |
174 |
aacgaagcattacccatcacagttgcaattcaactcaaagta |
215 |
Q |
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| T |
10339902 |
aacgaagcattactcatcatagttgcaattcaactcaaagta |
10339943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 10339970 - 10340007
Alignment:
| Q |
221 |
atactaatgtttatcacagtattatctttcaacttgat |
258 |
Q |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
10339970 |
atactaatgcttatcacagtattatctttcaacttgat |
10340007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 10370283 - 10370312
Alignment:
| Q |
8 |
atactacaaccataggcgaaaggacagttc |
37 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
10370283 |
atactacaaccataggcgaaaggacagttc |
10370312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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