View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_142 (Length: 275)

Name: NF11385A_low_142
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_142
NF11385A_low_142
[»] chr1 (16 HSPs)
chr1 (5-271)||(13244651-13244917)
chr1 (5-179)||(13271474-13271648)
chr1 (5-180)||(12964005-12964180)
chr1 (5-188)||(30368238-30368421)
chr1 (43-263)||(13085911-13086131)
chr1 (36-256)||(13100812-13101031)
chr1 (5-263)||(13080995-13081253)
chr1 (5-188)||(13094278-13094461)
chr1 (36-188)||(13070337-13070489)
chr1 (36-258)||(13007009-13007231)
chr1 (6-180)||(19279299-19279473)
chr1 (5-188)||(13129707-13129890)
chr1 (5-188)||(13161400-13161583)
chr1 (36-258)||(13204268-13204490)
chr1 (41-262)||(13065379-13065600)
chr1 (120-179)||(13010661-13010720)
[»] chr6 (1 HSPs)
chr6 (57-148)||(31380253-31380344)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 271
Target Start/End: Original strand, 13244651 - 13244917
Alignment:
Q  5 agcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaaga 104  Q
    ||||||||||||||||||| | ||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244651 agcctgaaagatggatatcagctagaggagggattataaatgtaccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaaga 13244750  T
Q  105 tattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctatt 204  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13244751 tcttagcttcgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaacttctatt 13244850  T
Q  205 gcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataacaaagttg 271  Q
    | | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13244851 gtcgttcgcatgaaacacggcttaaaggtcgaagtcagtaaaagatgcatttgatataacaaagttg 13244917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 13271648 - 13271474
Alignment:
Q  5 agcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaaga 104  Q
    ||||||| ||||||||||| | || ||||   ||| ||||||| || ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  13271648 agcctgagagatggatatcagataaaggacaaattatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaagctgtcttgggaaaga 13271549  T
Q  105 tattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtca 179  Q
    |||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||| ||||||||||||||    
T  13271548 tattagctttattcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtca 13271474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 180
Target Start/End: Original strand, 12964005 - 12964180
Alignment:
Q  5 agcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaaga 104  Q
    |||||||||||||||||||   ||||||||  ||| |||| || || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  12964005 agcctgaaagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattgggaaaga 12964104  T
Q  105 tattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcac 180  Q
    |||||||||||||||||||||||||||||| |||  | |||| |||||||||| |||| | |||||||||||||||    
T  12964105 tattagctttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacatagaagtggtggaaggtcac 12964180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 5 - 188
Target Start/End: Original strand, 30368238 - 30368421
Alignment:
Q  5 agcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaaga 104  Q
    ||||||| |||||| |||| |  ||||||  |||| ||||||| || |||||||||||||||||||||||| |||| |||||||||||||| || |||||    
T  30368238 agcctgagagatgggtatcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggacctagaagttgtatgggtaaaga 30368337  T
Q  105 tattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac 188  Q
    | |||| || ||||||||||| |||||||||||| | |||||||||||||||| ||||||||| ||||||||||||||||||||    
T  30368338 tcttagtttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaac 30368421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 43 - 263
Target Start/End: Complemental strand, 13086131 - 13085911
Alignment:
Q  43 catgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctt 142  Q
    ||||| || |||| |||||||||||| || |||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||     
T  13086131 catgtaccatcttgcaagttcatagcatttaatgcaggtcctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgcta 13086032  T
Q  143 tgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcag 242  Q
    ||||||||||||||| |||||| || |||||||||||  ||||||| |  |||  ||||||||  || |||||| |||| || || || ||| || | ||    
T  13086031 tgttatggaagtttcacatacaagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttag 13085932  T
Q  243 taaaagatgcatttgatataa 263  Q
    ||||||||| |||||||||||    
T  13085931 taaaagatgaatttgatataa 13085911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 36 - 256
Target Start/End: Complemental strand, 13101031 - 13100812
Alignment:
Q  36 cattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgca 135  Q
    |||| ||||||| || |||||||||||||||||||||||| |||| |||||||||||||| || || |||||||||||  |||||||||| ||||| |||    
T  13101031 cattatacatgtaccatcttacaagttcatagctttcaat-caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgca 13100933  T
Q  136 gcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcg 235  Q
    ||| ||||||||  |||||||| ||||||||||||||||||||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| ||||||     
T  13100932 gctgctttgttaccgaagtttcacatacaggtggtggaaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtca 13100833  T
Q  236 aaatcagtaaaagatgcattt 256  Q
    || ||| ||||||||||||||    
T  13100832 aagtcactaaaagatgcattt 13100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 5 - 263
Target Start/End: Original strand, 13080995 - 13081253
Alignment:
Q  5 agcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaaga 104  Q
    ||||||| ||||||||||| | |||||||   ||| |||| || |||||||| ||||||||||| || ||||||||||| ||||| ||| ||||||||||    
T  13080995 agcctgagagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagcgtttaatgcaggtccaagaagctgtcttgggaaaga 13081094  T
Q  105 tattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctatt 204  Q
    |||||| ||| ||||||||||||||||||||||| |  | ||||  ||||||| ||| |||||||||||||||||| |  |||  |  ||   |||||||    
T  13081095 tattagttttcttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaaggtcactcaataattcctagggtttctatt 13081194  T
Q  205 gcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataa 263  Q
      |||||||||| |||| ||||| |||||| ||||  ||||||||||||||||||||||    
T  13081195 ctccttcgcatggaacatggctttaaggtcaaaattcgtaaaagatgcatttgatataa 13081253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 5 - 188
Target Start/End: Complemental strand, 13094461 - 13094278
Alignment:
Q  5 agcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaaga 104  Q
    ||||||| ||||||||||| |  || ||||  ||| ||||||| || |||||||||||||||||||||||  |||| || |||| |||||| || |||||    
T  13094461 agcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacacaggacccagaatttgtataggtaaaga 13094362  T
Q  105 tattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac 188  Q
    |||||| ||  |||||||||| ||||| |||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  13094361 tattagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccctgtaac 13094278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 36 - 188
Target Start/End: Original strand, 13070337 - 13070489
Alignment:
Q  36 cattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgca 135  Q
    |||| ||||||| || |||||||||||||||||||||||| ||||||| ||||||||| | || |||||| |||| ||  |||||||||| ||||| |||    
T  13070337 cattatacatgttccatcttacaagttcatagctttcaatacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgca 13070436  T
Q  136 gcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac 188  Q
    ||| ||||||||  |||||||| ||||||||||||||||||||||||||||||    
T  13070437 gctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaac 13070489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 36 - 258
Target Start/End: Complemental strand, 13007231 - 13007009
Alignment:
Q  36 cattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgca 135  Q
    |||| ||||||| || |||||||||||||||||||||||| ||||||||||||||||||| || || |||||||||||  |||||||||| ||||| |||    
T  13007231 cattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgca 13007132  T
Q  136 gcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcg 235  Q
    ||  ||||||||   ||||||| |||| ||||||||| |||||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||      
T  13007131 gcagctttgttaccaaagtttcacataaaggtggtggcaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtta 13007032  T
Q  236 aaatcagtaaaagatgcatttga 258  Q
    || ||| ||||||||||||||||    
T  13007031 aagtcactaaaagatgcatttga 13007009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 180
Target Start/End: Original strand, 19279299 - 19279473
Alignment:
Q  6 gcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagat 105  Q
    |||||| ||||||||||||| |||||||   ||| ||||||| || || |||||||||||||| || ||||||||||| ||||| ||| | || ||||||    
T  19279299 gcctgagagatggatatcggatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagat 19279398  T
Q  106 attagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcac 180  Q
    ||||  ||  ||||||||||||||||||||||| || | ||||||||||||||||||||||| ||||||||||||    
T  19279399 attactttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaaggtcac 19279473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 5 - 188
Target Start/End: Complemental strand, 13129890 - 13129707
Alignment:
Q  5 agcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaaga 104  Q
    ||||||| ||||||||||| |  || ||||  ||| ||||||| || |||||||||||| ||||||||||  |||| || |||| |||||| || |||||    
T  13129890 agcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaaga 13129791  T
Q  105 tattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac 188  Q
    | |||| ||  |||||||||| ||||| |||||| ||||||||  |||||||| ||||||||||||||||||||||||||||||    
T  13129790 tcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaac 13129707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 5 - 188
Target Start/End: Complemental strand, 13161583 - 13161400
Alignment:
Q  5 agcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaaga 104  Q
    ||||||| ||||||||||| |  || ||||  ||| ||||||| || ||||||||||||||| |||||||  |||| || |||| |||||| || |||||    
T  13161583 agcctgagagatggatatctgagaggggagatattatacatgtaccttcttacaagttcatatctttcaacacaggacccagaatttgtataggtaaaga 13161484  T
Q  105 tattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac 188  Q
    | |||| ||  |||||||||| ||||| |||||| |||||||| ||||||||| ||||||||||||||||||||||| ||||||    
T  13161483 tcttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccttgtaac 13161400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 258
Target Start/End: Complemental strand, 13204490 - 13204268
Alignment:
Q  36 cattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgca 135  Q
    |||| ||||||| || |||||||||||||||||||||||| ||||||||||||||||| | || |||||| |||| ||  |||||||||| ||||| |||    
T  13204490 cattatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgca 13204391  T
Q  136 gcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcg 235  Q
    ||| ||||||||  ||| |||| |||| || | |||||||||||||||||||| |  |  | |||| |||  |||| ||||||| | || ||||||||      
T  13204390 gctgctttgttacagaattttcacataaagatagtggaaggtcaccctgtaaccccaaagatttcttttgttcttcacatgaaatatggtttaaaggtta 13204291  T
Q  236 aaatcagtaaaagatgcatttga 258  Q
    || ||| ||||||||||||||||    
T  13204290 aagtcactaaaagatgcatttga 13204268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 41 - 262
Target Start/End: Original strand, 13065379 - 13065600
Alignment:
Q  41 tacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttc 140  Q
    ||||||| |||||||||||||||||||||||||||||||| || ||||||||| | || |||||||| | ||| ||| ||||||| |||| ||| ||  |    
T  13065379 tacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccgcggc 13065478  T
Q  141 tttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatc 240  Q
    | |  ||||||||||| |||||||  | ||||| ||||| |||||||| |  ||   ||||||| ||||  | |||||||| ||||| ||||||  | ||    
T  13065479 tatactatggaagttttgcatacatttagtggatggtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaaggtcatagtc 13065578  T
Q  241 agtaaaagatgcatttgatata 262  Q
    | ||||||||||||||||||||    
T  13065579 actaaaagatgcatttgatata 13065600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 13010720 - 13010661
Alignment:
Q  120 aatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtca 179  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||| ||||||||||||||    
T  13010720 aatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtca 13010661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 31380253 - 31380344
Alignment:
Q  57 caagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttat 148  Q
    |||||||||| |||||||| |||| ||  ||||||||||||| |||||| |||| ||  ||||||| || |||  ||| |||||||||||||    
T  31380253 caagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatgtctgcggcttctttgttat 31380344  T

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