View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11385A_low_143 (Length: 274)
Name: NF11385A_low_143
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_143 |
 | |
|
| [»] scaffold0496 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 272
Target Start/End: Original strand, 17433490 - 17433764
Alignment:
| Q |
4 |
gcataaatcatatacaatcagccagactaagagtgctacatagaatcctagctattaaatctaatcccaacacagagagttcagttagctagtgagagca |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17433490 |
gcataaatcatatacaatcagccagactaagagtgctacatagaatcctagctattaaatctaatcccaacacagagagttcagttagctagtgagagca |
17433589 |
T |
|
| Q |
104 |
taactaacaaagaaaggttggttgttggagaagcatgaacaagcttgaatccaagctcgctagctttcttatggtgatactcacaacttcctctctatgt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17433590 |
taactaacaaagaaaggttggttgttggagaagcatgaacaagcttgaatccaagctcgctagctttcttatggtgatactcacaacttcctctctatgt |
17433689 |
T |
|
| Q |
204 |
ttttctctctaaatgtattaaacttatg------tacaactcataaatgcattaaactttttcaaatggatgtaa |
272 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17433690 |
ttttctctctaaatgcattaaacttatgtgcatatacaactcataaatgcattaaattttttcaaatggatgtaa |
17433764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 179
Target Start/End: Original strand, 16551233 - 16551318
Alignment:
| Q |
97 |
gagagcataactaacaaagaaaggttggt---tgttggagaagcatgaacaagcttgaatccaagctcgctagctttcttatggtg |
179 |
Q |
| |
|
|||||||||||||||||| |||| ||| | |||||||||| ||| ||||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
16551233 |
gagagcataactaacaaataaagattgataaatgttggagaaacatcaacaagcttgaatccaatctccctagccctcttatggtg |
16551318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 2136520 - 2136587
Alignment:
| Q |
97 |
gagagcataactaacaaagaaaggttggt---tgttggagaagcatgaacaagcttgaatccaagctc |
161 |
Q |
| |
|
|||||||||||||||||| ||||||| | | |||||||| ||| ||||||||||||||||||||| |
|
|
| T |
2136520 |
gagagcataactaacaaaagaaggttgatacatattggagaaacatcaacaagcttgaatccaagctc |
2136587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 13002592 - 13002665
Alignment:
| Q |
4 |
gcataaatcatatacaatcagccagactaagagtgctacatagaatcctagcta-ttaaatctaatcccaacac |
76 |
Q |
| |
|
||||||||||||||||| ||||| | ||||||| ||||||||||| ||| || ||| ||||||||||||||| |
|
|
| T |
13002592 |
gcataaatcatatacaactagccaaattaagagtaatacatagaatcttagatatttacatctaatcccaacac |
13002665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 13077250 - 13077323
Alignment:
| Q |
4 |
gcataaatcatatacaatcagccagactaagagtgctacatagaatcctagcta-ttaaatctaatcccaacac |
76 |
Q |
| |
|
||||||||||||||||| ||||| | ||||||| ||||||||||| ||| || ||| ||||||||||||||| |
|
|
| T |
13077250 |
gcataaatcatatacaactagccaaattaagagtaatacatagaatcttagatatttacatctaatcccaacac |
13077323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 179
Target Start/End: Complemental strand, 28609129 - 28608993
Alignment:
| Q |
47 |
aatcctagctattaa-atctaatcccaacaca-gagagttcagttagctagtgagagcataactaacaaagaaaggttg---gttgttggagaagcatga |
141 |
Q |
| |
|
||||||||||||| | ||||||||| |||||| ||||||| ||||| | | ||| |||||||||||| ||||||| | |||||||||||||| | |
|
|
| T |
28609129 |
aatcctagctatttacatctaatcctaacacaagagagtttagttatccatgtagaacataactaacaagagaaggttgaaagatgttggagaagcatca |
28609030 |
T |
|
| Q |
142 |
acaagcttgaatccaagctcgctagctttcttatggtg |
179 |
Q |
| |
|
| |||||||||||||||||| |||||| || ||||||| |
|
|
| T |
28609029 |
a-aagcttgaatccaagctccctagctctcctatggtg |
28608993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 32044647 - 32044576
Alignment:
| Q |
4 |
gcataaatcatatacaatcagccagactaagagtgctaca-tagaatcctagcta-ttaaatctaatcccaa |
73 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| |||| || ||||||||||| ||| |||||||||||| |
|
|
| T |
32044647 |
gcataaatcatatacaatcagctagattaagagtaatacattaaaatcctagctacttacatctaatcccaa |
32044576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 20618086 - 20618140
Alignment:
| Q |
5 |
cataaatcatatacaatcagccagactaagagtgctacatagaatcctagctatt |
59 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||| ||||||||| ||||| ||||| |
|
|
| T |
20618086 |
cataaatcatatacaaccaaccagattaagagtactacatagattcctatctatt |
20618140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 9683 - 9629
Alignment:
| Q |
5 |
cataaatcatatacaatcagccagactaagagtgctacatagaatcctagctatt |
59 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||| |||||||| || |||||||| |
|
|
| T |
9683 |
cataaatcatatacaaacagcgagactaagagtattacatagattcgtagctatt |
9629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 26280089 - 26280159
Alignment:
| Q |
4 |
gcataaatcatatacaatcagccagactaagagtgctacatagaatcctagcta-ttaaatctaatcccaa |
73 |
Q |
| |
|
||||||||||||| |||| || |||| ||||||| ||||||||||||||| || ||| |||||||||||| |
|
|
| T |
26280089 |
gcataaatcatatgcaattagtcagattaagagtaatacatagaatcctagatatttacatctaatcccaa |
26280159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University