View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_144 (Length: 272)
Name: NF11385A_low_144
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_144 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 260
Target Start/End: Original strand, 39629950 - 39630199
Alignment:
| Q |
6 |
atgtgggtggtgaactggtgatcttggaaagtaaatgttgatagtgtgttataagttgtgagcttccatggcaagatggtaagttggaatcgaaacattn |
105 |
Q |
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| T |
39629950 |
atgtgggtggtgaactagtgatcttggaaagtaaatgttgaaagtgtgttataagttgtgagcttccatg-----atggtaagttgaaatcgaaacatta |
39630044 |
T |
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| Q |
106 |
nnnnnncaacttgagttcctatttctccaagaccaccaaacaccaacaacaaagaagttggaactcgaagaagctagccagcatttaaaacaattgacaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39630045 |
aaaaaacaacttgagttcctatttctccaagaccaccaaacaccaacaacaaagaagttggaactcgaagaagctagccagcatttaaaacaattgacaa |
39630144 |
T |
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| Q |
206 |
tgtatgggtttgagacaaatttaaatgagatgaagcctagagcataccaaatatt |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39630145 |
tgtatgggtttgagacaaatttaaatgagatgaagcctagagcataccaaatatt |
39630199 |
T |
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