View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_145 (Length: 271)

Name: NF11385A_low_145
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_145
NF11385A_low_145
[»] chr2 (1 HSPs)
chr2 (13-252)||(40206977-40207216)
[»] chr4 (3 HSPs)
chr4 (52-174)||(21793780-21793902)
chr4 (93-174)||(4482608-4482689)
chr4 (77-158)||(38487696-38487777)
[»] chr1 (1 HSPs)
chr1 (77-165)||(42796516-42796604)
[»] chr8 (1 HSPs)
chr8 (83-172)||(41037332-41037421)
[»] chr3 (1 HSPs)
chr3 (56-147)||(55220931-55221022)
[»] chr7 (1 HSPs)
chr7 (55-168)||(40835126-40835239)


Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 40207216 - 40206977
Alignment:
Q  13 atactacaacaggtacaaaggaggagttaacactgtttctgatggttacagcaaaggcactgctttaggtgctgaaattattggtacctttgttttggtc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40207216 atactacaacaggtacaaaggaggagttaacactgtttctgatggttacagcaaaggcactgctttaggtgctgaaattattggtacctttgttttggtc 40207117  T
Q  113 tacactgttttctctgctactgatcctaagagaagtgctagggattcccatgttcctgtaagtatcaaattaatcacttttttgggattaatagttttct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40207116 tacactgttttctctgctactgatcctaagagaagtgctagggattcccatgttcctgtaagtatcaaattaatcacttttttgggattaatagttttct 40207017  T
Q  213 taatttagtttgtgacttatggttgttttgttgattaaat 252  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  40207016 taatttagtttgtgacttatggttattttgttgattaaat 40206977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 21793780 - 21793902
Alignment:
Q  52 tgatggttacagcaaaggcactgctttaggtgctgaaattattggtacctttgttttggtctacactgttttctctgctactgatcctaagagaagtgct 151  Q
    |||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||| |||||||||||||| |  |||    
T  21793780 tgatggctacaacaaaggcacagctttaggtgctgaaatcattggtacctttgttcttgtctacactgtcttctctgccactgatcctaagaggaacgct 21793879  T
Q  152 agggattcccatgttcctgtaag 174  Q
    ||||| |||||||||||||||||    
T  21793880 agggactcccatgttcctgtaag 21793902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 4482689 - 4482608
Alignment:
Q  93 ttggtacctttgttttggtctacactgttttctctgctactgatcctaagagaagtgctagggattcccatgttcctgtaag 174  Q
    ||||||| |||||| | || |||||||| ||||||||||||||| | ||||||| ||| || || |||||||||||||||||    
T  4482689 ttggtacatttgttcttgtttacactgtcttctctgctactgatgccaagagaaatgcaagagactcccatgttcctgtaag 4482608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 38487777 - 38487696
Alignment:
Q  77 ttaggtgctgaaattattggtacctttgttttggtctacactgttttctctgctactgatcctaagagaagtgctagggatt 158  Q
    ||||||| ||| || |||||||||||||| ||||| |||||| | |||||||||| | |||||||||||| |||||| ||||    
T  38487777 ttaggtgttgagatcattggtacctttgtattggtatacactttgttctctgctatttatcctaagagaaatgctagagatt 38487696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 165
Target Start/End: Original strand, 42796516 - 42796604
Alignment:
Q  77 ttaggtgctgaaattattggtacctttgttttggtctacactgttttctctgctactgatcctaagagaagtgctagggattcccatgt 165  Q
    ||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||    
T  42796516 ttaggtgctgagattgttggtacctttgttttggtttacaccgttttctctgccactgatcctaagagaagtgctagagattcacatgt 42796604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 41037332 - 41037421
Alignment:
Q  83 gctgaaattattggtacctttgttttggtctacactgttttctctgctactgatcctaagagaagtgctagggattcccatgttcctgta 172  Q
    ||||| ||| |||||||||||||| | ||||||||||||||||||||||||||| | ||||||| |||||| || || ||||||||||||    
T  41037332 gctgagattgttggtacctttgttcttgtctacactgttttctctgctactgatgccaagagaaatgctagagactctcatgttcctgta 41037421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 55220931 - 55221022
Alignment:
Q  56 ggttacagcaaaggcactgctttaggtgctgaaattattggtacctttgttttggtctacactgttttctctgctactgatcctaagagaag 147  Q
    ||||||||||||||| ||||  ||||||||||||| || || || ||||| ||||| ||||||||||||||||||||||| || ||||||||    
T  55220931 ggttacagcaaaggctctgccctaggtgctgaaatgatcggaacttttgtgttggtttacactgttttctctgctactgaccccaagagaag 55221022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 168
Target Start/End: Complemental strand, 40835239 - 40835126
Alignment:
Q  55 tggttacagcaaaggcactgctttaggtgctgaaattattggtacctttgttttggtctacactgttttctctgctactgatcctaagagaagtgctagg 154  Q
    |||||| |||||||| ||||  |||||||||||||| ||||| ||||||||| | || ||||| || |||||||| || ||||| || |||| ||||||     
T  40835239 tggttatagcaaaggaactgggttaggtgctgaaataattggaacctttgttcttgtttacaccgtgttctctgccacagatcccaaaagaaatgctaga 40835140  T
Q  155 gattcccatgttcc 168  Q
    || || ||||||||    
T  40835139 gactctcatgttcc 40835126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University