View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_149 (Length: 269)
Name: NF11385A_low_149
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_149 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 263
Target Start/End: Original strand, 9458970 - 9459217
Alignment:
| Q |
13 |
gttggtttgggcggttatccataagcacgggttttgttgtcatgcctaattgtgaagacccattcataaacatccgaagacaaataaaatttgatccaac |
112 |
Q |
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| T |
9458970 |
gttggtttgggcggttatccataagcacgggttttgttgtcatgcctaattgtgaagacccattcataaacatccaaagacaaataaaatttgatccaac |
9459069 |
T |
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| Q |
113 |
ataaatagtttgaaaacgtcaatttttggttaaataacactcaaacgtaatcttcttgacaaattgtttcaaaaaggagaaagnnnnnnnnngtgtaata |
212 |
Q |
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| T |
9459070 |
ataaatagtttgaaaacgtcaatttttggttaaataacactcaaacgtaatcttcttgacaaattatttcaaaaaagagaaa---aaaaaaagtgtaata |
9459166 |
T |
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| Q |
213 |
gcaaaacagtgggtgtcaaaaacaacttcccaaaaagataagagatttagg |
263 |
Q |
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| T |
9459167 |
gcaaaacagtgggtgtcaaaaacaacttcccaaaaagataagagatttagg |
9459217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 27063470 - 27063519
Alignment:
| Q |
13 |
gttggtttgggcggttatccataagcacgggttttgttgtcatgcctaat |
62 |
Q |
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| T |
27063470 |
gttggtttgggcggttatccatgggcacgggttttgttgccatgcctaat |
27063519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 29014927 - 29014876
Alignment:
| Q |
14 |
ttggtttgggcggttatccataagcacgggttttgttgtcatgcctaattgt |
65 |
Q |
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| T |
29014927 |
ttggtttgggcagatatccattaacacgagttttgttgtcatgcctaattgt |
29014876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 28309616 - 28309666
Alignment:
| Q |
13 |
gttggtttgggcggttatccataagcacgggttttgttgtcatgcctaatt |
63 |
Q |
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|||||||||||||| ||||||| |||||||||||||| ||||||||||| |
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| T |
28309616 |
gttggtttgggcggatatccatggacacgggttttgttgccatgcctaatt |
28309666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 12915600 - 12915650
Alignment:
| Q |
10 |
ggtgttggtttgggcggttatccataagcacgggttttgttgtcatgccta |
60 |
Q |
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| T |
12915600 |
ggtgttggtttgggcgggtacccataagcatggattttgttgtcatgccta |
12915650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 41914954 - 41914907
Alignment:
| Q |
13 |
gttggtttgggcggttatccataagcacgggttttgttgtcatgccta |
60 |
Q |
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| T |
41914954 |
gttggtttgggcggttacccatgggcatgggttttgttgtcatgccta |
41914907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 37032444 - 37032491
Alignment:
| Q |
14 |
ttggtttgggcggttatccataagcacgggttttgttgtcatgcctaa |
61 |
Q |
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||||||| ||||| ||||||| |||||||||||||||| ||||||||| |
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| T |
37032444 |
ttggtttcggcggatatccatgagcacgggttttgttgccatgcctaa |
37032491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 39256422 - 39256370
Alignment:
| Q |
8 |
ttggtgttggtttgggcggttatccataagcacgggttttgttgtcatgccta |
60 |
Q |
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|||| |||||||||||||| || |||| ||||||||||||||| |||||||| |
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| T |
39256422 |
ttggggttggtttgggcgggtacccatgggcacgggttttgttgccatgccta |
39256370 |
T |
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