View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_151 (Length: 268)
Name: NF11385A_low_151
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_151 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 31059826 - 31060080
Alignment:
| Q |
14 |
agaccaaatgagagaaggaaaaacatcacatgacaatcggtgtcagacaatacgacatgtgattttattcaattatttttcttcttctgaatttattacc |
113 |
Q |
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| T |
31059826 |
agaccaaatgagagaaggaaaaacatcacatgacaatcggtgtcagacaatacgacatgtgattttattcaatttttttttttcttctgaatttattacc |
31059925 |
T |
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| Q |
114 |
attgtcgacgtgtcagtttaaaatgcccgtctttgtgaaaatgctttattgcagaggtgtagcagcctaagcacgtttataacgaacatgagaatacaaa |
213 |
Q |
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| T |
31059926 |
attgtcgacgtgtcagtttaaaatgcccgtctttgtgaaaatgctttattgcagaggtgtagcagcctaagcacgtttataacgaacatgagaatacaaa |
31060025 |
T |
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| Q |
214 |
tcatgcatccaaataatttcagccgtcaattatggagagaaaaagtagtctagaa |
268 |
Q |
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| T |
31060026 |
tcatgcatccaaataatttcagccgtcaattatggagagaaaaagtagtctagaa |
31060080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 20811214 - 20811175
Alignment:
| Q |
198 |
aacatgagaatacaaatcatgcatccaaataatttcagcc |
237 |
Q |
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| T |
20811214 |
aacatgagaatgaaaatcatgcatccaaataatttcagcc |
20811175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 20837569 - 20837530
Alignment:
| Q |
198 |
aacatgagaatacaaatcatgcatccaaataatttcagcc |
237 |
Q |
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| T |
20837569 |
aacatgagaatgaaaatcatgcatccaaataatttcagcc |
20837530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 20812462 - 20812425
Alignment:
| Q |
14 |
agaccaaatgagagaaggaaaaacatcacatgacaatc |
51 |
Q |
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| T |
20812462 |
agaccaaatgagagaaggaaaaacatcacgtgataatc |
20812425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 31176032 - 31175995
Alignment:
| Q |
14 |
agaccaaatgagagaaggaaaaacatcacatgacaatc |
51 |
Q |
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| T |
31176032 |
agaccaaatgagagaaggaaaaacgtcacatgataatc |
31175995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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