View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_153 (Length: 268)
Name: NF11385A_low_153
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_153 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 56045309 - 56045570
Alignment:
| Q |
1 |
agcacaacaaattggatcaggttaccatggacttggaattggtgcattcacacttgattgggctggaatttcagcttatcatggaagcccacttgttgca |
100 |
Q |
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| T |
56045309 |
agcacaacaaattggatcaggttaccatggacttggaattggtgcattcacacttgattgggctggaatttcagcttatcatggaagcccacttgttgca |
56045408 |
T |
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| Q |
101 |
ccgtggacttccattgttaatgttggggttggatttatcatgttcatctatataattctacccgtatgttactggaggtttaacacttttgatgctagga |
200 |
Q |
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| T |
56045409 |
ccgtggacttccattgttaatgttggggttggatttatcatgttcatctatataattctacccgtatgttactggaggtttaacacttttgatgctagga |
56045508 |
T |
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| Q |
201 |
agtttcctatattctctaaccagttgctcacgtcaagtggacacaagtatgacacgacaaag |
262 |
Q |
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| T |
56045509 |
agtttcctatattctctaatcagttgttcacgtcaagtggacacaagtatgacacgacaaag |
56045570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 47 - 243
Target Start/End: Original strand, 55706814 - 55707012
Alignment:
| Q |
47 |
ttcacacttgattgggctggaatttcagcttatcatggaagcccacttgttgcaccgtggacttccattgttaatgttggggttggatttatcatgttca |
146 |
Q |
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| T |
55706814 |
ttcacacttgactgcgcttggatttcagcttatcatggaagccctcttgttacaccgtggtcttccactgttaatgtttgggttggatttatcttgttca |
55706913 |
T |
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| Q |
147 |
tctatataattctacccgt-atgttactggaggtttaaca-cttttgatgctaggaagtttcctatattctctaaccagttgctcacgtcaagtggaca |
243 |
Q |
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| T |
55706914 |
tctatataattctatctataatgttagtggaagtttaacaccttttgatgctaggaagtttcctatactttctaatcagttgttcacatccagtggaca |
55707012 |
T |
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