View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_166 (Length: 261)
Name: NF11385A_low_166
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_166 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 243
Target Start/End: Original strand, 49375409 - 49375627
Alignment:
| Q |
24 |
aaaagtaacagtcttctataaatgccgttgagaagtggctgtggacgactagttctgtttctgttctcgattgaagcccaaagttaacaaactcttttct |
123 |
Q |
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|||||||| |||||| |||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49375409 |
aaaagtaatagtctt-tataaatgccgttgagaagtggctatggatgactagtcctgtttctgttctcgattgaagcccaaagttaacaaacttttttct |
49375507 |
T |
|
| Q |
124 |
ttgcaattttctacatgcactgctaaatacaccccatttttatttcccacgccaacatcctaactcataccatactcctatttttctcattcactatttg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49375508 |
ttgcaattttctacatgcactgctaaatacaccccatttttatttcccacgccaacatcctaactcataccatactcctatttttctcattcactatttg |
49375607 |
T |
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| Q |
224 |
aaagagccctaaaatttctt |
243 |
Q |
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|||||||||||||||||||| |
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| T |
49375608 |
aaagagccctaaaatttctt |
49375627 |
T |
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