View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_17 (Length: 440)
Name: NF11385A_low_17
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 420
Target Start/End: Complemental strand, 7470690 - 7470289
Alignment:
| Q |
19 |
taagtttcatgtgatatttatgatcatcatgtgattcagtgtatagtataggttgatcttgataaacatgggatatgaaagggagatatcaatattgtat |
118 |
Q |
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| T |
7470690 |
taagtttcatgtgatatttatgatcatcatgtgattcagtatatagtataggttgatcttgataaacatcggatatgaaagggagatatcaatattgtat |
7470591 |
T |
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| Q |
119 |
ctcactttgtttgtcttcttttaaaatagagaccgaatacaaatcatatgacaaattaacaatagtggagaactatatcacgtactagtggaaagcatga |
218 |
Q |
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| T |
7470590 |
atgactttgtttgtcttcttttaaaatagagaccgaatacaaatcatatgacaaattaacaatagtggagaactatatcacgtactagtggaaagcatga |
7470491 |
T |
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| Q |
219 |
tgatgaattattggttgttccttcaaaataaagggtagtggacttccacccnnnnnnnnnnnnnnnnnggtgatcgactttggatggttctttattttat |
318 |
Q |
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| T |
7470490 |
tgatgaattattggttgttccttcaaaataaagggtagtggacttccacccaaaaagaaaagaaaaaaggtaatcgactttggatgggtctttattttat |
7470391 |
T |
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| Q |
319 |
cctttgtttgtatacatgtgtcacacatatttgattagctccatcatgttcatctcgtgaaatcaagatactttttctaatgaaaaatattaactggttt |
418 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7470390 |
cctttgtttgtatacacgtgtcacacatattcgattagctccatcatgttcatctcgtgagatcaagatactttttctaatgaaaaatattaactggttt |
7470291 |
T |
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| Q |
419 |
tt |
420 |
Q |
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| T |
7470290 |
tt |
7470289 |
T |
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