View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_171 (Length: 257)
Name: NF11385A_low_171
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_171 |
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| [»] scaffold0007 (3 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 149614 - 149368
Alignment:
| Q |
1 |
gatgaaaattgttgttgttgttgaggttgtttcttggatgtgtctcctttgtcaccaaccatattgttgtcaaataaaaaatggttctaatggagagaga |
100 |
Q |
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| T |
149614 |
gatgaaaattgttgttgttgttgaggttgtttcttggatgtgtctcctttgtcaccaaccatgttgttgtaaaataaaaaatggttctaatggagagagg |
149515 |
T |
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| Q |
101 |
aaaagaaggaagtagaacaaacgtatctatctatctttatgttggtgttgtaatgtttattttttgttgagaaaatagggttttaagttaaaaagaaaat |
200 |
Q |
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| T |
149514 |
aaaagaaggaagtagaacaaacgtatctatctatctttatgttggtgttgtaatgtttattttttgttgagaaaatagggttttaagttaaaaagaaaat |
149415 |
T |
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| Q |
201 |
aattttgaaaaaggggtgatagatgatagtgatatttattttgaaaa |
247 |
Q |
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| T |
149414 |
aattttgaaaaaggggtgataaatgatagtgatgtttatttcgaaaa |
149368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 156 - 242
Target Start/End: Complemental strand, 149015 - 148929
Alignment:
| Q |
156 |
tttattttttgttgagaaaatagggttttaagttaaaaagaaaataattttgaaaaaggggtgatagatgatagtgatatttatttt |
242 |
Q |
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| T |
149015 |
tttattttttgttgagaaaatagggttttaagttaaaaagaaaataattatgaaagaggggtggtagatgatagtgatgtttatttt |
148929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 148922 - 148855
Alignment:
| Q |
167 |
ttgagaaaatagggttttaagttaaaaagaaaataattttgaaa-aaggggtgatagatgatagtgat |
233 |
Q |
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| T |
148922 |
ttgagaaattagggtttaaagttaaaaagaaaataatgttaaaagagggggtgatagatgacagtgat |
148855 |
T |
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