View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11385A_low_172 (Length: 257)
Name: NF11385A_low_172
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_172 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold0272 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 257
Target Start/End: Complemental strand, 10909743 - 10909493
Alignment:
| Q |
7 |
ctgaaatgaaagaatgagaaaaagttgattacaatctgtgtaaatacacccgcgggggtgtggaatggtttgtggagatggcttggtttatccttggtgt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10909743 |
ctgaaatgaaagaatgagaaaaagttgattacaatcggtgtaaatacacccgcgggggtgtggaatggtttgtggagatggcttggtttttccttggtgt |
10909644 |
T |
|
| Q |
107 |
tacctcataatctgttcttgttgtgggagggttggagtggtgctgcgaggaataataagattcatagaggttttcggttgatttggcacgccgcggttcg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
10909643 |
tacctcataatctgttcttgttgtgggagggttggaatggtgctgcgaggaataataagattcgtagaggttttcggttgatttggcacgccgcggtttg |
10909544 |
T |
|
| Q |
207 |
gagtttatggagggtgagaaatgatcgaattttcaataattctaattgtga |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10909543 |
gagtttatggagggtgagaaatgatcgaattttcaataattctaattgtga |
10909493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 27753790 - 27753851
Alignment:
| Q |
181 |
cggttgatttggcacgccgcggttcggagtttatggagggtgagaaatgatcgaattttcaa |
242 |
Q |
| |
|
||||||||||||||||||| || ||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
27753790 |
cggttgatttggcacgccgtagtgtggaatttatggagggtgagaaatgaccgaattttcaa |
27753851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 13725686 - 13725936
Alignment:
| Q |
7 |
ctgaaatgaaagaatgagaaaaagttgattacaatctgtgtaaatacacccgcgggggtgtggaatggtttgtggagatggcttggtttatccttggtgt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13725686 |
ctgaaatgaaagaatgagaaaaagttgattacaatcggtgtaaatacacccgcgggggtgtggaatggtttgtggagatggcttggtttttccttggtgt |
13725785 |
T |
|
| Q |
107 |
tacctcataatctgttcttgttgtgggagggttggagtggtgctgcgaggaataataagattcatagaggttttcggttgatttggcacgccgcggttcg |
206 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
13725786 |
tacctcataatatgttcttgttatgggagggttggaatggtgctgcgaggaataataagattcgtagaggttttcggttgatttggcacgccgcggtttg |
13725885 |
T |
|
| Q |
207 |
gagtttatggagggtgagaaatgatcgaattttcaataattctaattgtga |
257 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13725886 |
gagtttatggagggcgagaaatgatcgaattttcaataattctaattgtga |
13725936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 256
Target Start/End: Original strand, 26728799 - 26728881
Alignment:
| Q |
174 |
aggttttcggttgatttggcacgccgcggttcggagtttatggagggtgagaaatgatcgaattttcaataattctaattgtg |
256 |
Q |
| |
|
||||||||| ||||||||||| |||| ||| ||||| ||||||||| ||||||||| |||||||| || ||||| ||||||| |
|
|
| T |
26728799 |
aggttttcgtttgatttggcatgccgtggtgtggagtatatggagggcgagaaatgagcgaatttttaacaattcaaattgtg |
26728881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 2489 - 2540
Alignment:
| Q |
182 |
ggttgatttggcacgccgcggttcggagtttatggagggtgagaaatgatcg |
233 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
2489 |
ggttgatttggcacgccgcggtttggagtatttggagggtgagaaatgatcg |
2540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 44685886 - 44685839
Alignment:
| Q |
63 |
ggtgtggaatggtttgtggagatggcttggtttatccttggtgttacc |
110 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44685886 |
ggtgtggaatgctttgtggagatggcttggtttttccttggtgttacc |
44685839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 41572709 - 41572651
Alignment:
| Q |
184 |
ttgatttggcacgccgcggttcggagtttatggagggtgagaaatgatcgaattttcaa |
242 |
Q |
| |
|
||||||||||| |||| || ||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
41572709 |
ttgatttggcatgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaa |
41572651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University