View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_18 (Length: 436)

Name: NF11385A_low_18
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_18
NF11385A_low_18
[»] chr1 (4 HSPs)
chr1 (7-435)||(7440462-7440894)
chr1 (343-435)||(6397753-6397845)
chr1 (357-405)||(42517120-42517168)
chr1 (331-405)||(41941063-41941137)
[»] chr8 (1 HSPs)
chr8 (336-435)||(4490295-4490394)
[»] chr7 (1 HSPs)
chr7 (343-416)||(24447163-24447236)
[»] chr5 (2 HSPs)
chr5 (362-435)||(19340568-19340641)
chr5 (331-425)||(19276885-19276979)
[»] chr4 (2 HSPs)
chr4 (333-398)||(36010202-36010267)
chr4 (332-426)||(3284201-3284295)
[»] scaffold0154 (1 HSPs)
scaffold0154 (362-405)||(19342-19385)


Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 7 - 435
Target Start/End: Original strand, 7440462 - 7440894
Alignment:
Q  7 ctaagactgttagactttcttttgtaatggaatcgtaccccacaatcaaagatatttaggtgttagaaggttcatttgccctcaatcctccttctagcac 106  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  7440462 ctaagactgttatactttcttttgtaatggaatcgtaccccacaatcaaagatatttaggtgctaaaaggttcatttgccctcaatcctccttctagcac 7440561  T
Q  107 caatgttttgatatcaagtttgatttaaaacatgtttaggtattgattgctttgactcctttataagtcatcacaattttcttctttgttaaat----gg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||    
T  7440562 caatgttttgatatcaagtttgatttaaaacatgtttaggtattgattgctttgactcctttataagtcatcacaattttcttctttgttaaattaatgg 7440661  T
Q  203 ctagagtgaattgaggaaatcaagcgttataaattatctttaattttgatttctaagttgttaaagtatacctaatatatgcaaaacattaaagaaggca 302  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||    
T  7440662 ctagagtgaattgaggaaatcaagtgttataaattatctttaattttgatttctaagttgttaaagtttacctaatatatgcaagacattaaataaggca 7440761  T
Q  303 agggccggttgtattatggctcatcagaggtaatattgttaactgaatcatagcagtaatactatatatattgtttgtaacaccgaaactctaattcatc 402  Q
    |||| |||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  7440762 aggggcggtagtagtatggctcatcagaggtaatattgttaactgaatcatagtagtaatattatatatattgtttgtaacaccgaaactctaattcatc 7440861  T
Q  403 acaataataaaaacaaaactataaccgctctat 435  Q
    |||||||||||||||||||||||||||||||||    
T  7440862 acaataataaaaacaaaactataaccgctctat 7440894  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 343 - 435
Target Start/End: Complemental strand, 6397845 - 6397753
Alignment:
Q  343 aactgaatcatagcagtaatactatatatattgtttgtaacaccgaaactctaattcatcacaataataaaaacaaaactataaccgctctat 435  Q
    ||||||||||||| | ||||||||||||||||| ||||||||| |||||  || ||||||||| ||||| ||||||||||||| | |||||||    
T  6397845 aactgaatcatagtaataatactatatatattgcttgtaacactgaaaccttagttcatcacagtaatagaaacaaaactatagctgctctat 6397753  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 42517120 - 42517168
Alignment:
Q  357 agtaatactatatatattgtttgtaacaccgaaactctaattcatcaca 405  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||    
T  42517120 agtagtactatatatattgtttgtaacaccgaaaccctaattcatcaca 42517168  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 405
Target Start/End: Original strand, 41941063 - 41941137
Alignment:
Q  331 ggtaatattgttaactgaatcatagcagtaatactatatatattgtttgtaacaccgaaactctaattcatcaca 405  Q
    ||||||||||| ||||||||| ||| |||| || ||||||||||  ||||||||  ||||| |||||||||||||    
T  41941063 ggtaatattgtaaactgaatcgtagtagtagtagtatatatattacttgtaacattgaaaccctaattcatcaca 41941137  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 4490295 - 4490394
Alignment:
Q  336 tattgttaactgaatcatagcagtaatactatatatattgtttgtaacaccgaaactctaattcatcacaataataaaaacaaaactataaccgctctat 435  Q
    |||||| ||||||||||||   ||| ||||||||||||||  || ||||| |||||  |||||||||| ||||||| |||||| |||||||| |||||||    
T  4490295 tattgtaaactgaatcataattgtattactatatatattgcatgcaacactgaaaccttaattcatcataataatacaaacaagactataactgctctat 4490394  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 416
Target Start/End: Original strand, 24447163 - 24447236
Alignment:
Q  343 aactgaatcatagcagtaatactatatatattgtttgtaacaccgaaactctaattcatcacaataataaaaac 416  Q
    ||||||||| |||||||| || ||||| ||||| |||||| || ||||||| ||||||||||| ||||| ||||    
T  24447163 aactgaatcgtagcagtagtattatatgtattgcttgtaatactgaaactcaaattcatcacagtaatacaaac 24447236  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 435
Target Start/End: Original strand, 19340568 - 19340641
Alignment:
Q  362 tactatatatattgtttgtaacaccgaaactctaattcatcacaataataaaaacaaaactataaccgctctat 435  Q
    |||||||||||||| |||||||||  |||||||||||||||| |  ||||||||  |||||||| | |||||||    
T  19340568 tactatatatattgcttgtaacacttaaactctaattcatcatatcaataaaaatgaaactatatctgctctat 19340641  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 425
Target Start/End: Original strand, 19276885 - 19276979
Alignment:
Q  331 ggtaatattgttaactgaatcatagcagtaatactatatatattgtttgtaacaccgaaactctaattcatcacaataataaaaacaaaactata 425  Q
    ||||||||||| | ||||||| ||| | |  |||||||||||||| | ||||||  ||||| |||| |||||||| ||||| |||| ||||||||    
T  19276885 ggtaatattgtaatctgaatcgtagtaattgtactatatatattgctagtaacattgaaaccctaaatcatcacagtaatacaaacgaaactata 19276979  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 36010202 - 36010267
Alignment:
Q  333 taatattgttaactgaatcatagcagtaatactatatatattgtttgtaacaccgaaactctaatt 398  Q
    ||||||||| ||||||||| ||| |||| || ||||||||||||||||||||  |||||| |||||    
T  36010202 taatattgtgaactgaatcgtagaagtagtattatatatattgtttgtaacattgaaactttaatt 36010267  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 426
Target Start/End: Complemental strand, 3284295 - 3284201
Alignment:
Q  332 gtaatattgttaactgaatcatagcagtaatactatatatattgtttgtaacaccgaaactctaattcatcacaataataaaaacaaaactataa 426  Q
    |||||||||| |||| |||  ||| |||| || ||||||| ||| ||||||| |  |||| ||||||||||||| ||||||||||  ||||||||    
T  3284295 gtaatattgtaaacttaattgtagtagtagtaatatatattttgcttgtaacgctaaaaccctaattcatcacagtaataaaaacggaactataa 3284201  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 405
Target Start/End: Original strand, 19342 - 19385
Alignment:
Q  362 tactatatatattgtttgtaacaccgaaactctaattcatcaca 405  Q
    |||||||||||||||||||||||  ||||| |||||||||||||    
T  19342 tactatatatattgtttgtaacagtgaaaccctaattcatcaca 19385  T

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