View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_184 (Length: 254)
Name: NF11385A_low_184
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_184 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 11565497 - 11565736
Alignment:
| Q |
8 |
aaatgcaagtgcactacaaattgttggaattaaacacttgtttcttctttactcaatcagttatcaatacctattatctatccattcacgtgaaacacaa |
107 |
Q |
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| T |
11565497 |
aaatgcaagtgcactacaaattgttggaattaaacacttgtttcttctttactcaatcagttatcaatacctattatctatccattcacgtgaaacacaa |
11565596 |
T |
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| Q |
108 |
cttcttcgacgaacccgaactaccacaacgcagttaatcctctgttccccataactcaccacaatctgcgccatttccgtcgttcatgtctatgcaccat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11565597 |
cttcttcgacgaacccgaactaccacaacgcagttaatcctctgttccccattactcaccacaatctgcgccatttccgtcgttcatgtctatgcaccat |
11565696 |
T |
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| Q |
208 |
ttcccaccctcgatctaatctctatccgttcatttcactc |
247 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |
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| T |
11565697 |
ttcccaccctcgatctaatatctatccgttcatttcactc |
11565736 |
T |
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