View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_186 (Length: 252)
Name: NF11385A_low_186
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_186 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 19370106 - 19369881
Alignment:
| Q |
23 |
attgtcaggttgatacagtaaacaattttgaagatggcagttggaaggaactacatactgtaccagcatgccttttatctcatctcacaacatgctcact |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19370106 |
attgtcaggttgatacagtaaacaattttgaagatggcagttggaaggaactacatactgtaccagcatgccttttatctcatctcacaacatgctcact |
19370007 |
T |
|
| Q |
123 |
tagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaagagtactaaacaccatgacaattcagattgccgaatca |
222 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19370006 |
tagaaattactgccgcctaaactgtgagattcaatttgcaaaatatatcttgaagaactcaacagtactaaacaccatgacaattcagattgccgaatca |
19369907 |
T |
|
| Q |
223 |
gtagatacaaatacaaaactccaaac |
248 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
19369906 |
gtagatacaaatacaaaactccaaac |
19369881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 49856712 - 49856554
Alignment:
| Q |
81 |
tgtaccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaac |
180 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||| ||| |||||||||| || ||| |||||||||||||||||||| || |||| |
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| T |
49856712 |
tgtaccagaatgccttttatctcatcttacaacatgctcacttagaagttatagccgcataaattgcgagcttcaatttgcaaaatatatcatgcagaat |
49856613 |
T |
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| Q |
181 |
tcaagagtactaaacaccatgacaattcagattgccgaatcagtagatacaaatacaaa |
239 |
Q |
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||||||||||||| || ||||| |||||||| |||| ||| | |||||||||||||| |
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| T |
49856612 |
tcaagagtactaagcatcatgaaaattcagagtgccaaatttctggatacaaatacaaa |
49856554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 239
Target Start/End: Original strand, 50815364 - 50815518
Alignment:
| Q |
85 |
ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaa |
184 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||| ||| ||||||| | ||||| || |||||| |||||||||| || |||||| | ||| |||| |
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| T |
50815364 |
ccagaatgccttttatctcatcttacaacatgctcccttcgaaattatagtcgcatcaattgtgagtttcaatttgctaactatatcatccggaattcaa |
50815463 |
T |
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| Q |
185 |
gagtactaaacaccatgacaattcagattgccgaatcagtagatacaaatacaaa |
239 |
Q |
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||||||||| |||||||| |||||||| ||| ||||| ||||| ||||||||||| |
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| T |
50815464 |
gagtactaagcaccatgataattcagagtgcagaatccgtagagacaaatacaaa |
50815518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 50860500 - 50860346
Alignment:
| Q |
85 |
ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaa |
184 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||| ||| ||||||| | ||||| || |||||| |||||||||| || |||||| | ||| |||| |
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| T |
50860500 |
ccagaatgccttttatctcatcttacaacatgctcccttcgaaattatagtcgcatcaattgtgagtttcaatttgctaactatatcatccggaattcaa |
50860401 |
T |
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| Q |
185 |
gagtactaaacaccatgacaattcagattgccgaatcagtagatacaaatacaaa |
239 |
Q |
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||||||||| |||||||| |||||||| ||| ||||| ||||| ||||||||||| |
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| T |
50860400 |
gagtactaagcaccatgataattcagagtgcagaatccgtagagacaaatacaaa |
50860346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 221
Target Start/End: Original strand, 39559581 - 39559717
Alignment:
| Q |
85 |
ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaa |
184 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||||||| |||| |||||| ||||||| ||||||||| |||||||||| |||||||| || |||| |||| |
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| T |
39559581 |
ccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaatttgctaaatatataatgcagaattcaa |
39559680 |
T |
|
| Q |
185 |
gagtactaaacaccatgacaattcagattgccgaatc |
221 |
Q |
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||||| ||| |||||||||||||||| |||| |||| |
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| T |
39559681 |
gagtattaaggaccatgacaattcagagtgccaaatc |
39559717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 49868094 - 49867974
Alignment:
| Q |
85 |
ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaa |
184 |
Q |
| |
|
|||| |||||||| ||||||||| ||||| |||||||||||||||||| |||||||||| |||||| ||| ||||||||||||||| || |||| ||| |
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| T |
49868094 |
ccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaatatataatgcagaattcag |
49867995 |
T |
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| Q |
185 |
gagtactaaacaccatgacaa |
205 |
Q |
| |
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||||||| | |||||||||| |
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| T |
49867994 |
gagtactgaggaccatgacaa |
49867974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 247
Target Start/End: Complemental strand, 49973158 - 49973001
Alignment:
| Q |
90 |
atgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaagagta |
189 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||| || |||| | |||||| |||| |||||||||||||| ||||||| ||||||||| |
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| T |
49973158 |
atgccttttatcctatctatcaacatgctcacttagaaattattggggcatcacttgtgagcttcactttgcaaaatatattatgaagaattcaagagta |
49973059 |
T |
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| Q |
190 |
ctaaacaccatgacaattcagattgccgaatcagtagatacaaatacaaaactccaaa |
247 |
Q |
| |
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|| | | |||||| |||||||| |||| ||| ||||||||| |||||| ||||||| |
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|
| T |
49973058 |
cttagcgccatgaaaattcagagtgccaaattcctagatacaactacaaagctccaaa |
49973001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 49979391 - 49979304
Alignment:
| Q |
152 |
ttcaatttgcaaaatatatcttgaagaactcaagagtactaaacaccatgacaattcagattgccgaatcagtagatacaaatacaaa |
239 |
Q |
| |
|
|||||||||| || |||||| || | || | ||||||||||| ||||||||||||||| |||| |||| ||||| ||||||||||| |
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| T |
49979391 |
ttcaatttgctaactatatcatgcataattgaagagtactaagaaccatgacaattcagggtgccaaatccgtagagacaaatacaaa |
49979304 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 247
Target Start/End: Complemental strand, 2216 - 2063
Alignment:
| Q |
94 |
cttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaagagtactaa |
193 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| | |||||||| |||||| ||| |||||||| ||||||| || |||| |||||| || || |
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| T |
2216 |
cttttatctcatcttacaacatgctcacttagaaattacagtcgcataaattgtgagcttccatttgcaagatatatcatgcagaattcaagaatattac |
2117 |
T |
|
| Q |
194 |
acaccatgacaattcagattgccgaatcagtagatacaaatacaaaactccaaa |
247 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||| ||||||| |
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| T |
2116 |
gcaccatgacaattcagagtgccgaattcttagatacaaatacaaagctccaaa |
2063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 247
Target Start/End: Complemental strand, 3762 - 3609
Alignment:
| Q |
94 |
cttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaagagtactaa |
193 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| | |||||||| |||||| ||| |||||||| ||||||| || |||| |||||| || || |
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| T |
3762 |
cttttatctcatcttacaacatgctcacttagaaattacagtcgcataaattgtgagcttccatttgcaagatatatcatgcagaattcaagaatattac |
3663 |
T |
|
| Q |
194 |
acaccatgacaattcagattgccgaatcagtagatacaaatacaaaactccaaa |
247 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||| ||||||| |
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|
| T |
3662 |
gcaccatgacaattcagagtgccgaattcttagatacaaatacaaagctccaaa |
3609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 31211699 - 31211807
Alignment:
| Q |
81 |
tgtaccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaac |
180 |
Q |
| |
|
|||||||| || ||||||| |||||| ||||||||||||||||||| | |||||||||||||| |||| ||||||||||||||| || ||||| |
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| T |
31211699 |
tgtaccagattgtcttttatatcatcttacaacatgctcacttagaagcataagaagcataaactgtgagcttcagtttgcaaaatatatcatgcagaac |
31211798 |
T |
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| Q |
181 |
tcaagagta |
189 |
Q |
| |
|
||| ||||| |
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|
| T |
31211799 |
tcaggagta |
31211807 |
T |
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