View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_187 (Length: 252)
Name: NF11385A_low_187
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_187 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 252
Target Start/End: Complemental strand, 45200841 - 45200611
Alignment:
| Q |
22 |
gacctcgtaagtttttctactttgtgaatgttttgattgacggtgaagcgtagcattagaatcacgatgagtcattgtgattttggtaaaagccatacat |
121 |
Q |
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| T |
45200841 |
gacctcgtaagtttttctactttgtgaatgttttgattgacggtgaagcgtagctttagaatcacgatgagtcattgtgattttggtaaaagccatactt |
45200742 |
T |
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| Q |
122 |
agcttcaacaaaatcatgatgtcaccgtgattttgacaaactcacagtttgttacattttattttttacaatctatgaataacaaacattgacatgtcga |
221 |
Q |
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| T |
45200741 |
agcttcaacaaaatcataatgtcactgtgattttgaaaaactcaccgtttgttacattttatttgttacaatctatgaataacagacattgacatgtcga |
45200642 |
T |
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| Q |
222 |
caacaataatcaattgtcggtgtggtgttga |
252 |
Q |
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| T |
45200641 |
caacaataatcatttgtcggtgtggtgttga |
45200611 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 7873108 - 7873062
Alignment:
| Q |
120 |
atagcttcaacaaaatcatgatgtcaccgtgattttgacaaactcac |
166 |
Q |
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| T |
7873108 |
atagcttcaacaaaatcatggtgtcaccgtaattttatcaaactcac |
7873062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 23585733 - 23585692
Alignment:
| Q |
124 |
cttcaacaaaatcatgatgtcaccgtgattttgacaaactca |
165 |
Q |
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| T |
23585733 |
cttcaacaaaatcatgttgtcactgtgattttgtcaaactca |
23585692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 27870946 - 27870987
Alignment:
| Q |
125 |
ttcaacaaaatcatgatgtcaccgtgattttgacaaactcac |
166 |
Q |
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| T |
27870946 |
ttcaacaaaatcatggtgtcaccgtgattttatcaaactcac |
27870987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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