View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_191 (Length: 250)

Name: NF11385A_low_191
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_191
NF11385A_low_191
[»] chr2 (5 HSPs)
chr2 (1-238)||(29801777-29802019)
chr2 (1-211)||(31486713-31486922)
chr2 (1-211)||(31488997-31489206)
chr2 (1-211)||(34576736-34576967)
chr2 (142-238)||(15729886-15729981)
[»] chr4 (9 HSPs)
chr4 (1-166)||(8739267-8739432)
chr4 (1-238)||(45166874-45167110)
chr4 (1-238)||(45161982-45162218)
chr4 (1-181)||(50855906-50856085)
chr4 (1-211)||(42468584-42468793)
chr4 (1-211)||(42470913-42471122)
chr4 (5-96)||(19429226-19429317)
chr4 (38-89)||(43179590-43179641)
chr4 (41-82)||(24908240-24908281)
[»] chr7 (13 HSPs)
chr7 (1-238)||(3932518-3932754)
chr7 (1-238)||(3934757-3934993)
chr7 (1-238)||(36464368-36464604)
chr7 (1-211)||(8733642-8733848)
chr7 (4-173)||(19788937-19789105)
chr7 (1-173)||(19786631-19786802)
chr7 (1-238)||(8414636-8414871)
chr7 (1-238)||(3052003-3052243)
chr7 (38-211)||(42678752-42678932)
chr7 (124-238)||(16497075-16497189)
chr7 (124-238)||(16535257-16535371)
chr7 (124-238)||(16630291-16630405)
chr7 (145-211)||(8414808-8414874)
[»] chr1 (7 HSPs)
chr1 (1-238)||(29833220-29833456)
chr1 (1-211)||(734723-734932)
chr1 (1-211)||(2403972-2404181)
chr1 (38-211)||(8933731-8933911)
chr1 (1-60)||(29833852-29833911)
chr1 (131-202)||(419213-419284)
chr1 (58-125)||(18353725-18353792)
[»] chr3 (3 HSPs)
chr3 (21-222)||(18966276-18966489)
chr3 (41-125)||(8535493-8535578)
chr3 (40-125)||(1701094-1701179)
[»] chr8 (7 HSPs)
chr8 (1-238)||(21268275-21268510)
chr8 (1-211)||(36379612-36379821)
chr8 (1-211)||(4876822-4877031)
chr8 (1-211)||(4879150-4879359)
chr8 (1-238)||(36377327-36377563)
chr8 (1-211)||(24519299-24519508)
chr8 (145-238)||(21268447-21268540)
[»] chr5 (9 HSPs)
chr5 (1-211)||(23164385-23164594)
chr5 (1-211)||(37207702-37207911)
chr5 (14-211)||(22600742-22600938)
chr5 (1-211)||(11850052-11850261)
chr5 (1-238)||(11852310-11852546)
chr5 (38-211)||(1779399-1779579)
chr5 (14-238)||(1779600-1779840)
chr5 (1-96)||(37215407-37215502)
chr5 (145-238)||(37207645-37207738)
[»] scaffold0050 (2 HSPs)
scaffold0050 (1-123)||(29257-29378)
scaffold0050 (1-123)||(31570-31693)
[»] scaffold0599 (1 HSPs)
scaffold0599 (1-76)||(1580-1655)
[»] chr6 (1 HSPs)
chr6 (56-181)||(21199149-21199281)
[»] scaffold0312 (1 HSPs)
scaffold0312 (131-202)||(11287-11358)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 29802019 - 29801777
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29802019 aggaagactccccattacaaactagaaatatctacaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 29801920  T
Q  101 aagatttttccagtgcttaattttagagtgtctag----tagattccttattattctttagtattctagatacttccctattattatttggtggtctaga 196  Q
    |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  29801919 aagatttttccagtgcttaattttagagtgtctagtagctagattccttattattctttagtattctagatacttccctattattctttggtgttctaga 29801820  T
Q  197 gacttccatatta-ttttttattattccagggacttccatatt 238  Q
    ||||||||||||| ||||||||||||| || ||||||||||||    
T  29801819 gacttccatattatttttttattattctagagacttccatatt 29801777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 31486922 - 31486713
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | |||||||||||||||||||| |||||||||||||||| |||||||||||| || |||| |||| | |||||||||| ||||||  ||    
T  31486922 aggaaggctctccattacaaactagaaatatctggaaacaaagaaaagtccagagatatggatactctagtacataagcctagaaggatctagaaaagtt 31486823  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| |||||||||||| |||||||||||||  |||||||||||| |||||  ||||||| | | ||  ||||||| |    
T  31486822 aagacttccctagtgctta--tttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattctctagtcttctagaggc 31486725  T
Q  200 ttccatattatt 211  Q
    ||||| ||||||    
T  31486724 ttccacattatt 31486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 31489206 - 31488997
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | |||||||||||||||||||| |||||||||||||||| |||||||||||| || |||| |||| |  ||||||||| ||||||   |    
T  31489206 aggaaggctctccattacaaactagaaatatctggaaacaaagaaaagtccagagatatggatactctagtacataagcttagaaggatctagaaaagct 31489107  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| |||||||||||| |||||||||||||  |||||||||||| |||||  ||||||| ||| ||  | |||||||    
T  31489106 aagacttccctagtgctta--tttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttttagagac 31489009  T
Q  200 ttccatattatt 211  Q
    ||||| ||||||    
T  31489008 ttccacattatt 31488997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 34576736 - 34576967
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaaca---------aagaaaagtctagagatatggatgctatagttcatatgactagaaggattt 91  Q
    ||||||||||   |||||||||||||||||||||||||||         |||||||||||||||| ||| || || |||||||||||||||||||||| |    
T  34576736 aggaaggctctacattacaaactagaaatatctagaaacattgattacaaagaaaagtctagagacatgaatactctagttcatatgactagaaggatct 34576835  T
Q  92 agaaacattaagatttttccagtgcttaattt------------tagagtgtctagtagattccttattattctttagtattctagatacttccctatta 179  Q
    |||||  ||||||||| || ||||| ||||||            ||||||||| ||||| |||||  ||||||||||||||| |||| |||||| |||||    
T  34576836 agaaaagttaagatttctctagtgcgtaattttattttatttagtagagtgtccagtagcttcctcgttattctttagtattttagagacttccatatta 34576935  T
Q  180 ttatttggtggtctagagacttccatattatt 211  Q
    || ||| ||| |||||||||||||| ||||||    
T  34576936 ttctttagtgttctagagacttccacattatt 34576967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 15729981 - 15729886
Alignment:
Q  142 ccttattattctttagtattctagatacttccctattattatttggtggtctagagacttccatattattttttattattccagggacttccatatt 238  Q
    ||||||||||||||||||||||||| |||||| || |||| |||  | ||||||||||||||| |||||| |||||| ||| || ||| ||||||||    
T  15729981 ccttattattctttagtattctagagacttccttaatattcttttat-gtctagagacttccacattattctttattgttctagagacatccatatt 15729886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 8739432 - 8739267
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    ||||||||||   |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  8739432 aggaaggctctacattacaaactagaaatatctagaaacaaagaaaaatctagagatatggatgctctagttcatatgactagaaggatctagaaacatt 8739333  T
Q  101 aagatttttccagtgcttaattttagagtgtctagtagattccttattattctttagtattctaga 166  Q
    |||||||  | ||||| ||||||||| |||| |||||| ||||||||||||| |||||||||||||    
T  8739332 aagatttccctagtgcataattttagtgtgtatagtagcttccttattattcattagtattctaga 8739267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 45167110 - 45166874
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||   |||||||||| ||||||  |     
T  45167110 aggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagta 45167011  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| |||||||||||| |||||||||||||  |||||||||| | |||||  ||||||| ||| ||  |||||||||    
T  45167010 aagacttccctagtgctta--tttagtagtgtctagtagcttccttattattccctagtattctaaagacttctatattattctttagtcttctagagac 45166913  T
Q  200 ttccatattattttttattattccagggacttccatatt 238  Q
    |||||||||||| || |  |||| || ||||||||||||    
T  45166912 ttccatattattcttcaccattctagagacttccatatt 45166874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 45162218 - 45161982
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||   |||||||||| ||||||  |     
T  45162218 aggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagta 45162119  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| |||||||||||| || ||||||||||  |||||||||| | |||||  ||||||| ||| ||  |||||||||    
T  45162118 aagacttccctagtgctta--tttagtagtgtctagtagctttcttattattccctagtattctaaagacttctatattattctttagtcttctagagac 45162021  T
Q  200 ttccatattattttttattattccagggacttccatatt 238  Q
    |||||||||||| || |  |||| || ||||||||||||    
T  45162020 ttccatattattcttcaccattctagagacttccatatt 45161982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 50855906 - 50856085
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| || | || |||| | |||||||||| ||||||  ||    
T  50855906 aggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatggatactctggtacataagcctagaaggatctagaaaagtt 50856005  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattatt 181  Q
    |||| ||  | ||||||||  ||||| |||||||||||| |||||||||||||  |||||||||||| |||||| |||||||    
T  50856006 aagacttccctagtgctta--tttagtagtgtctagtagcttccttattattccatagtattctagagacttccatattatt 50856085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 42468584 - 42468793
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| | |||||||||| ||||||  ||    
T  42468584 aggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagtt 42468683  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| ||| |||||||| |||||||||||||   |||||||||||  ||||| ||||||| ||      |||||||||    
T  42468684 aagacttccctagtgctta--tttagtagtatctagtagcttccttattattccccagtattctagagtcttccatattattcttcaccattctagagac 42468781  T
Q  200 ttccatattatt 211  Q
    ||||||||||||    
T  42468782 ttccatattatt 42468793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 42470913 - 42471122
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| | |||||||||| ||||||  ||    
T  42470913 aggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagtt 42471012  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| ||| |||||||| |||||||||||||   |||||||||||  ||||| ||||||| ||      |||||||||    
T  42471013 aagacttccctagtgctta--tttagtagtatctagtagcttccttattattcccaagtattctagagtcttccatattattcttcaccattctagagac 42471110  T
Q  200 ttccatattatt 211  Q
    ||||||||||||    
T  42471111 ttccatattatt 42471122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 19429226 - 19429317
Alignment:
Q  5 aggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaa 96  Q
    |||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| || || |||| ||||  ||||||||||| ||||||    
T  19429226 aggctctccattacaaactagaaatatctataaacaaagaaaagtctagagatatgaatactctagtacataaaactagaaggatctagaaa 19429317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 43179641 - 43179590
Alignment:
Q  38 acaaagaaaagtctagagatatggatgctatagttcatatgactagaaggat 89  Q
    |||||||||||| |||||| |||||| || ||||||||||||||||||||||    
T  43179641 acaaagaaaagtatagagacatggatactctagttcatatgactagaaggat 43179590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 24908240 - 24908281
Alignment:
Q  41 aagaaaagtctagagatatggatgctatagttcatatgacta 82  Q
    |||||||||||| |||||||||| || |||||||||||||||    
T  24908240 aagaaaagtctaaagatatggatactttagttcatatgacta 24908281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3932754 - 3932518
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| | |||||||||| ||||||  ||    
T  3932754 aggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagtt 3932655  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| ||| |||||||| |||||||||||||  ||||||||||||  ||||| ||||||| ||| ||  |||||||||    
T  3932654 aagacttccctagtgctta--tttagtagtatctagtagcttccttattattccctagtattctagagtcttccatattattctttagtcttctagagac 3932557  T
Q  200 ttccatattattttttattattccagggacttccatatt 238  Q
    |||||||||||| || || |||| || ||||||||||||    
T  3932556 ttccatattattcttcatcattctagagacttccatatt 3932518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3934993 - 3934757
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| | |||||||||| ||||||  ||    
T  3934993 aggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagtt 3934894  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| ||| |||||||| |||||||||||||  ||||||||||||  ||||| ||||||| ||| ||  |||||||||    
T  3934893 aagacttccctagtgctta--tttagtagtatctagtagcttccttattattccctagtattctagagtcttccatattattctttagtcttctagagac 3934796  T
Q  200 ttccatattattttttattattccagggacttccatatt 238  Q
    |||||||||||| || || |||| || ||||||||||||    
T  3934795 ttccatattattcttcatcattctagagacttccatatt 3934757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 36464368 - 36464604
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | |||| ||||||||||||||||||||||||||||||||| ||||||||||| || |||| ||||  ||||||||||| ||||||  |     
T  36464368 aggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctggagatatggatactctagtacataaaactagaaggatctagaaaagtc 36464467  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| |||||||||||| |||||||||||||  |||||||||||| |||||  ||||||||||| ||| |||||||||    
T  36464468 aagacttccctagtgctta--tttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattatttagtgttctagagac 36464565  T
Q  200 ttccatattattttttattattccagggacttccatatt 238  Q
    ||||| |||||| | || ||||| || | ||||||||||    
T  36464566 ttccacattattctctagtattctagagtcttccatatt 36464604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 8733642 - 8733848
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| | |||||||||| ||||||  ||    
T  8733642 aggaaggctctcctttacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagtt 8733741  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    ||||     | ||||||||  ||||| |||||||||||| |||||||||||||  |||||||||||| |||||  ||||||| ||| ||| |||||||||    
T  8733742 aaga---ccctagtgctta--tttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtgttctagagac 8733836  T
Q  200 ttccatattatt 211  Q
    ||||||||||||    
T  8733837 ttccatattatt 8733848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 19789105 - 19788937
Alignment:
Q  4 aaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacattaag 103  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| | |||||||||| ||||||  |||||    
T  19789105 aaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaag 19789006  T
Q  104 atttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttcc 173  Q
    | ||  | ||||||||  ||||| |||||||||||| |||||||||||||  |||||||||||| ||||||    
T  19789005 acttccctagtgctta--tttagtagtgtctagtagcttccttattattccctagtattctagagacttcc 19788937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 19786802 - 19786631
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| | |||||||||| ||||||  ||    
T  19786802 aggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagtt 19786703  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttcc 173  Q
    |||| ||  | ||||||||  ||||| |||||||||||| |||||||||||||  || ||||||||| ||||||    
T  19786702 aagacttccctagtgctta--tttagtagtgtctagtagcttccttattattccctaatattctagagacttcc 19786631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 8414636 - 8414871
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||  | ||||  |||  ||||||| ||| ||||||  |     
T  8414636 aggaaggctctccattacaaactagaaaaatctagaaacaaagaaaagtctagagatatggatattttagtatataaaactagaa-gatctagaaaagtc 8414734  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| |||||||||||| |||||||||||||  |||||||||||| |||||  ||||||| ||| ||| |||||| ||    
T  8414735 aagacttccctagtgctta--tttagtagtgtctagtagtttccttattattccctagtattctagagacttctatattattctttagtgttctagatac 8414832  T
Q  200 ttccatattattttttattattccagggacttccatatt 238  Q
    ||||| |||||| | || ||||| || | ||||||||||    
T  8414833 ttccacattattctctagtattctagagtcttccatatt 8414871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3052243 - 3052003
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||  | |||| ||||  ||||||||||| ||||||  ||    
T  3052243 aggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaagtt 3052144  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattcctta----ttattctttagtattctagatacttccctattattatttggtggtctag 195  Q
    |||| ||  | | ||||||  ||||| |||||||||||| |||||||    ||||| | |||||||||||| |||||  ||||||| ||| ||| | |||    
T  3052143 aagacttccctaatgctta--tttagtagtgtctagtagcttccttattatttattatctagtattctagagacttctatattattctttagtgttatag 3052046  T
Q  196 agacttccatattattttttattattccagggacttccatatt 238  Q
    ||||||| | |||||| | || ||||| || | ||||||||||    
T  3052045 agacttcgacattattctctagtattctagagtcttccatatt 3052003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 38 - 211
Target Start/End: Original strand, 42678752 - 42678932
Alignment:
Q  38 acaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacattaagatttttccagtgcttaattt-------tagagtg 130  Q
    ||||||||| | ||||| | |||||| || ||| |||||||||||||||||| |||||||||||||||||| | ||||||| ||||       |||||||    
T  42678752 acaaagaaaggcctagaaacatggatactctaggtcatatgactagaaggatctagaaacattaagattttcctagtgctttattttatttagtagagtg 42678851  T
Q  131 tctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagacttccatattatt 211  Q
    |||||||| |||||||||||||  ||||||| |||| |||||| ||||||| ||| ||  |||||| ||||||||||||||    
T  42678852 tctagtagcttccttattattccatagtattttagagacttccatattattctttagttttctagaaacttccatattatt 42678932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 238
Target Start/End: Original strand, 16497075 - 16497189
Alignment:
Q  124 tagagtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagacttccatattattttttattattcc 223  Q
    ||||||||||||||| |||||||||||||  |||||||||||| ||||||  |||||| |||  |  ||||||| | ||||||||||| || || ||||     
T  16497075 tagagtgtctagtagcttccttattattccatagtattctagaaacttccacattattctttattattctagaggcatccatattattcttgatcattct 16497174  T
Q  224 agggacttccatatt 238  Q
    || ||||||||||||    
T  16497175 agagacttccatatt 16497189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 238
Target Start/End: Original strand, 16535257 - 16535371
Alignment:
Q  124 tagagtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagacttccatattattttttattattcc 223  Q
    ||||||||||||||| ||| |||||||||  |||||||||||| ||||||  |||||| |||  |  ||||||| ||||||||||||| || || ||||     
T  16535257 tagagtgtctagtagcttctttattattccatagtattctagagacttccacattattctttattattctagaggcttccatattattcttgatcattct 16535356  T
Q  224 agggacttccatatt 238  Q
    |  ||||||||||||    
T  16535357 atagacttccatatt 16535371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 238
Target Start/End: Complemental strand, 16630405 - 16630291
Alignment:
Q  124 tagagtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagacttccatattattttttattattcc 223  Q
    ||||||||||||||| ||| |||||||||  |||||||||||| ||||||  |||||| |||  |  ||||||| ||||||||||||| || || ||||     
T  16630405 tagagtgtctagtagcttctttattattccatagtattctagagacttccacattattctttattattctagaggcttccatattattcttgatcattct 16630306  T
Q  224 agggacttccatatt 238  Q
    |  ||||||||||||    
T  16630305 atagacttccatatt 16630291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 8414808 - 8414874
Alignment:
Q  145 tattattctttagtattctagatacttccctattattatttggtggtctagagacttccatattatt 211  Q
    |||||||||||||| ||||||||||||||  |||||| | | ||  ||||||| |||||||||||||    
T  8414808 tattattctttagtgttctagatacttccacattattctctagtattctagagtcttccatattatt 8414874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 29833220 - 29833456
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| |||| | |||||||||| ||||||  ||    
T  29833220 aggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagtt 29833319  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| |||||||||||| |||||||||||||  |||||||||||| |||||  ||||||| ||| ||| |||||||||    
T  29833320 aagacttccctagtgctta--tttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtgttctagagac 29833417  T
Q  200 ttccatattattttttattattccagggacttccatatt 238  Q
    ||||| |||||| | || ||||| || | ||||||||||    
T  29833418 ttccacattattctctagtattctagagtcttccatatt 29833456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 734723 - 734932
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||   |||||||||| ||||||  ||    
T  734723 aggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagtt 734822  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| |||||||||||| |||||| ||||||  |||||||||||| |||||  ||||||| ||| ||  |||| ||||    
T  734823 aagacttccctagtgctta--tttagtagtgtctagtagcttccttgttattccctagtattctagagacttctatattattctttagtcttctaaagac 734920  T
Q  200 ttccatattatt 211  Q
    ||||| ||||||    
T  734921 ttccacattatt 734932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 2403972 - 2404181
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| | |||||||||| ||||||  ||    
T  2403972 aggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagtt 2404071  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| ||| |||||||| |||||||||||||  |||||||||||| |||||  ||||||| ||| ||  ||||||||     
T  2404072 aagacttccctagtgctta--tttagtagtatctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagat 2404169  T
Q  200 ttccatattatt 211  Q
    ||||| ||||||    
T  2404170 ttccacattatt 2404181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 211
Target Start/End: Original strand, 8933731 - 8933911
Alignment:
Q  38 acaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacattaagatttttccagtgcttaattt-------tagagtg 130  Q
    ||||||||| | ||||| | |||||| || |||||||||||||||||||||| |||||||||||||||||| | ||||||| ||||       |||||||    
T  8933731 acaaagaaaggcctagaaacatggatactctagttcatatgactagaaggatctagaaacattaagattttcctagtgctttattttatttagtagagtg 8933830  T
Q  131 tctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagacttccatattatt 211  Q
    |||| ||| |||||||||||||  ||||||| |||| |||||| |||| || ||| ||  | |||| | ||||||||||||    
T  8933831 tctaatagcttccttattattccatagtattttagagacttccatatttttctttagttttttagaaatttccatattatt 8933911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 29833911 - 29833852
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatg 60  Q
    |||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||    
T  29833911 aggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatg 29833852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 419213 - 419284
Alignment:
Q  131 tctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagacttc 202  Q
    |||||||| |||||||||||||||||  ||| |||| |||||| ||||||| ||| ||| ||||||||||||    
T  419213 tctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 419284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 18353792 - 18353725
Alignment:
Q  58 atggatgctatagttcatatgactagaaggatttagaaacattaagatttttccagtgcttaatttta 125  Q
    |||||| || |||||||||||||||||||||| ||||||   ||||||||| | |||||| |||||||    
T  18353792 atggatactctagttcatatgactagaaggatctagaaaagataagattttcctagtgctcaatttta 18353725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 18966276 - 18966489
Alignment:
Q  21 actagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacattaagatttttccagtgcttaa 120  Q
    ||||||||||||||||||| |||||||||| |||||||||||| || |||| | ||||||||||||||| |||||||||||||||||| | |||||||||    
T  18966276 actagaaatatctagaaaccaagaaaagtcaagagatatggatactctagtacgtatgactagaaggatctagaaacattaagattttcctagtgcttaa 18966375  T
Q  121 ttt------------tagagtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagacttccatatt 208  Q
    |||            |||||| |||||||| | |||||||||| | |||||||||||| |||||||||||||| ||||||| |||||||||||||| |||    
T  18966376 ttttatttcatttagtagagtatctagtagctaccttattattatctagtattctagagacttccctattattctttggtgttctagagacttccacatt 18966475  T
Q  209 attttttattattc 222  Q
    ||| |||| |||||    
T  18966476 attctttagtattc 18966489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 8535578 - 8535493
Alignment:
Q  41 aagaaaagtctagagatatggatgctatagttcatatgactagaaggat-ttagaaacattaagatttttccagtgcttaatttta 125  Q
    ||||||||||||||||||||||| || ||||| |||||||||||||||| | | ||| | ||||||||||| ||||||| ||||||    
T  8535578 aagaaaagtctagagatatggatactttagtttatatgactagaaggatctaaaaaaaaataagatttttctagtgctttatttta 8535493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 1701179 - 1701094
Alignment:
Q  40 aaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacattaagatttttccagtgcttaatttta 125  Q
    ||||||||| ||||| ||||||||  | || ||||||||||||||||||| ||||||  |||||||||  | |||| |||||||||    
T  1701179 aaagaaaagcctagaaatatggataatctaattcatatgactagaaggatctagaaaagttaagatttccctagtgtttaatttta 1701094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 21268275 - 21268510
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||  ||||||||||| ||||||  |     
T  21268275 aggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactttagtacataaaactagaaggatctagaaaagtc 21268374  T
Q  101 aagatttttccagtgcttaattttagagtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagact 200  Q
    |||| ||  | |||  || ||||   |||||||||||| |||||||||||||  |||||||||||| |||||  ||||||| ||| ||| ||||||||||    
T  21268375 aagacttccctagt--tttatttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtgttctagagact 21268472  T
Q  201 tccatattattttttattattccagggacttccatatt 238  Q
    |||| |||||| | || ||||| || | ||||||||||    
T  21268473 tccacattattctctagtattctagagtcttccatatt 21268510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 36379612 - 36379821
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | |||||||||||||||||||| |||||||||||||||| |||||||||||| || |||| |||| | |||||||||| ||||||  ||    
T  36379612 aggaaggctctccattacaaactagaaatatctggaaacaaagaaaagtccagagatatggatactctagtacataagcctagaaggatctagaaaagtt 36379711  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| |||||||||||| |||||||||||||  |||||||||||| |||||  ||||||| ||| ||  |||||||||    
T  36379712 aagacttccctagtgctta--tttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagac 36379809  T
Q  200 ttccatattatt 211  Q
    ||||| ||||||    
T  36379810 ttccacattatt 36379821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 4877031 - 4876822
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| | |||||||||| ||||||  ||    
T  4877031 aggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactatagtacataagcctagaaggatctagaaaagtt 4876932  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| ||| |||||||| |||||||||||||   |||||||||||  ||||| ||||||| ||      |||||||||    
T  4876931 aagacttccctagtgctta--tttagtagtttctagtagcttccttattattccccagtattctagagtcttccatattattcttcaccattctagagac 4876834  T
Q  200 ttccatattatt 211  Q
    ||||||||||||    
T  4876833 ttccatattatt 4876822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 4879359 - 4879150
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| | |||||||||| ||||||  ||    
T  4879359 aggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactatagtacataagcctagaaggatctagaaaagtt 4879260  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| ||| |||||||| |||||||||||||   |||||||||||  ||||| ||||||| ||      |||||||||    
T  4879259 aagacttccctagtgctta--tttagtagtttctagtagcttccttattattccccagtattctagagtcttccatattattcttcaccattctagagac 4879162  T
Q  200 ttccatattatt 211  Q
    ||||||||||||    
T  4879161 ttccatattatt 4879150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 36377327 - 36377563
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | |||||||| |||||||||||  ||||||||||||||  |||||||||||| || |||| |||| | |||||||||| ||||||  ||    
T  36377327 aggaaggctctccattacaaagtagaaatatctgaaaacaaagaaaagttcagagatatggatactctagtacataagcctagaaggatctagaaaagtt 36377426  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| |||||||||||| |||||||||||||  |||||||||||| |||||  ||||||| ||| ||  |||||||||    
T  36377427 aagacttccctagtgctta--tttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagac 36377524  T
Q  200 ttccatattattttttattattccagggacttccatatt 238  Q
    ||||| ||||||  ||| ||||| || | ||||||||||    
T  36377525 ttccacattattccttagtattctagagtcttccatatt 36377563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 24519299 - 24519508
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||| || | || |||| | |||||||||| ||||||  ||    
T  24519299 aggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatggatacttttgtacataagcctagaaggatctagaaaagtt 24519398  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| ||| ||| |||| |||||||||||||   |||||||||||  ||||| ||||||| ||      |||||||||    
T  24519399 aagacttccctagtgctta--tttagtagtatctggtagcttccttattattccccagtattctagagtcttccatattattcttcaccattctagagac 24519496  T
Q  200 ttccatattatt 211  Q
    ||||||||||||    
T  24519497 ttccatattatt 24519508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 21268447 - 21268540
Alignment:
Q  145 tattattctttagtattctagatacttccctattattatttggtggtctagagacttccatattattttttattattccagggacttccatatt 238  Q
    |||||||||||||| ||||||| ||||||  |||||| | | ||  ||||||| ||||||||||||| || |  |||| || ||||||||||||    
T  21268447 tattattctttagtgttctagagacttccacattattctctagtattctagagtcttccatattattcttcaccattctagagacttccatatt 21268540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 23164385 - 23164594
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| |||| | |||||||||| ||||||  ||    
T  23164385 aggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagtt 23164484  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | |||| |||  ||||| |||||||||||| |||||||||||||  |||||||||||| |||||  ||||||| ||| ||  |||||||||    
T  23164485 aagacttccctagtgttta--tttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagac 23164582  T
Q  200 ttccatattatt 211  Q
    ||||| ||||||    
T  23164583 ttccacattatt 23164594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 37207911 - 37207702
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| |||||| || |||| |||| | |||||||||| ||||||  ||    
T  37207911 aggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagtt 37207812  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| |||||||||||| |||||||||||||  |||||||||| | |||||  ||||||| ||| ||  |||||||||    
T  37207811 aagacttccctagtgctta--tttagtagtgtctagtagcttccttattattccctagtattctacagacttctatattattctttagtcttctagagac 37207714  T
Q  200 ttccatattatt 211  Q
    ||||| ||||||    
T  37207713 ttccacattatt 37207702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 22600938 - 22600742
Alignment:
Q  14 attacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacattaagatttttccag 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| |||| | |||||||||| ||||||  |||||| ||  | ||    
T  22600938 attaccaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctag 22600839  T
Q  114 tgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagacttccatattatt 211  Q
    ||||||  ||||| |||||| ||||| || ||||||||||  |||||||||||| |||||  ||||||||||| ||  |||||||||||||| ||||||    
T  22600838 tgctta--tttagtagtgtcaagtagctttcttattattccatagtattctagagacttctatattattatttagtcttctagagacttccacattatt 22600742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 11850052 - 11850261
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| || | || |||| | |||||||||| ||||||  ||    
T  11850052 aggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatggatactcttgtacataagcctagaaggatctagaaaattt 11850151  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    |||| ||  | ||||||||  ||||| |||||||||||| || ||||||||||  ||||||| |||| |||||  ||||||| ||| ||  |||||||||    
T  11850152 aagacttccctagtgctta--tttagtagtgtctagtagctttcttattattccctagtattttagagacttctatattattctttagtcttctagagac 11850249  T
Q  200 ttccatattatt 211  Q
    ||||| ||||||    
T  11850250 ttccacattatt 11850261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 11852310 - 11852546
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||||||| | ||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||| |||| | ||||||||   ||||||  ||    
T  11852310 aggaaggctctccattaccaactagaaatatctagaaacaaataaaagtctagagatatggatactctagtacataagcctagaaggtcctagaaaagtt 11852409  T
Q  101 aagatttttccagtgcttaattttag-agtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagac 199  Q
    | || ||  | ||||||||  ||||| |||||||||||| |||||||||||||  |||||||||||| |||||  ||||||| ||| ||  |||||||||    
T  11852410 atgacttccctagtgctta--tttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagac 11852507  T
Q  200 ttccatattattttttattattccagggacttccatatt 238  Q
    ||||  |||||||  || ||||| || | ||||||||||    
T  11852508 ttcctcattatttcatagtattctagagtcttccatatt 11852546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 211
Target Start/End: Original strand, 1779399 - 1779579
Alignment:
Q  38 acaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacattaagatttttccagtgcttaatttta-------gagtg 130  Q
    ||||||||| | ||||| | |||||| || |||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||       |||||    
T  1779399 acaaagaaaggcctagaaacatggatactctagttcatatgactagaaggatctagaaacattaagatttttctagtgctttattttatttagtggagtg 1779498  T
Q  131 tctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagacttccatattatt 211  Q
    |||||||| |||||||||||||  ||||||| |||| |||||  ||||||| ||| ||  |||||| ||||||||||||||    
T  1779499 tctagtagcttccttattattccatagtattttagagacttctatattattctttagttttctagaaacttccatattatt 1779579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 1779600 - 1779840
Alignment:
Q  14 attacaaactagaaatatctagaaaca---------aagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacattaaga 104  Q
    |||||||||||||||||||||||||||         | |||| | ||||||||| ||||  | |||||||||||||||||||||| ||||||||||||||    
T  1779600 attacaaactagaaatatctagaaacattgattacaaggaaaggcctagagatagggatattctagttcatatgactagaaggatctagaaacattaaga 1779699  T
Q  105 tttttccagtgcttaatttta-------gagtgtctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagag 197  Q
    |||  | || |||| ||||||       || |||||||||| |||   ||||||||||||||||||||| |||||| ||||||| ||| ||| | | |||    
T  1779700 tttccctagcgctttattttatccagtagaatgtctagtagcttcgacattattctttagtattctagagacttccatattattctttagtgttatggag 1779799  T
Q  198 acttccatattattttttattattccagggacttccatatt 238  Q
    ||||||| ||| || |||| ||||| | |||||||||||||    
T  1779800 acttccacatttttctttagtattctaaggacttccatatt 1779840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 37215502 - 37215407
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaa 96  Q
    ||||||||||   ||||| |||||||||||||||||||||||||||||| |||||| |||||| || ||||  ||| | |||||||||| ||||||    
T  37215502 aggaaggctcttcattaccaactagaaatatctagaaacaaagaaaagtttagagacatggatactctagtatataagcctagaaggatctagaaa 37215407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 37207738 - 37207645
Alignment:
Q  145 tattattctttagtattctagatacttccctattattatttggtggtctagagacttccatattattttttattattccagggacttccatatt 238  Q
    |||||||||||||| ||||||| ||||||  ||||||   | ||  ||||||| ||||||||||||| || || |||| || ||||||||||||    
T  37207738 tattattctttagtcttctagagacttccacattattccctagtattctagagtcttccatattattcttcatcattctagagacttccatatt 37207645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 29378 - 29257
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacatt 100  Q
    |||||| ||| | ||||||||||| |||||||||||||||| |||||||||||||||||||||| | |||| ||||||||||||||||| ||||||||||    
T  29378 aggaagactctccattacaaactaaaaatatctagaaacaa-gaaaagtctagagatatggatgttctagtacatatgactagaaggatctagaaacatt 29280  T
Q  101 aagatttttccagtgcttaattt 123  Q
    |||||||  | ||||||||||||    
T  29279 aagatttccctagtgcttaattt 29257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 31693 - 31570
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatat--ggatgctatagttcatatgactagaaggatttagaaaca 98  Q
    |||||||||| | ||||||||||||||||||||| |||||| |||||||||||||||||  ||||| | |||| ||||||||||||||||| ||||||||    
T  31693 aggaaggctctccattacaaactagaaatatctaaaaacaa-gaaaagtctagagatatatggatgttctagtacatatgactagaaggatctagaaaca 31595  T
Q  99 ttaagatttttccagtgcttaattt 123  Q
    |||||||||  | ||||||||||||    
T  31594 ttaagatttccctagtgcttaattt 31570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 1655 - 1580
Alignment:
Q  1 aggaaggctcccgattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatgctatagttcata 76  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||    
T  1655 aggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacata 1580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 21199281 - 21199149
Alignment:
Q  56 atatggatgctatagttcatatgactagaaggatttagaaacattaagatttttccagtgcttaattt-------tagagtgtctagtagattccttatt 148  Q
    |||||||| ||  ||||||||||||||||||||| |||||||||||||||||  | ||||||| ||||       |||||||| |||||| |||||||||    
T  21199281 atatggatactccagttcatatgactagaaggatctagaaacattaagatttaactagtgctttattttatttagtagagtgtatagtagcttccttatt 21199182  T
Q  149 attctttagtattctagatacttccctattatt 181  Q
    ||||  |||||||||||| |||||| |||||||    
T  21199181 attccatagtattctagagacttccatattatt 21199149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 11358 - 11287
Alignment:
Q  131 tctagtagattccttattattctttagtattctagatacttccctattattatttggtggtctagagacttc 202  Q
    |||||||| |||||||||||||||||  ||| |||| |||||| ||||||| ||| ||| ||||||||||||    
T  11358 tctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 11287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University