View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_20 (Length: 435)
Name: NF11385A_low_20
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 16462607 - 16462340
Alignment:
| Q |
14 |
gaacaattagtatcacaattatgtacctagcttctgattttgttgnnnnnnnggcagcaacgtcctctccaaaaacaagagaaaacatcgttgagcgagt |
113 |
Q |
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| T |
16462607 |
gaacaattagtatcacaattatgtacctagcttctgattttgttgtttttttggcagcaacgtcctctccaaaaacaagagaaaacatcgttgagcgagt |
16462508 |
T |
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| Q |
114 |
aaggtttgagaagttaatgccaacaccctgacaagacaaacaaacggaaaattgaattaattttagatcaaatccgcgtccaatatccaacatgtgttaa |
213 |
Q |
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| T |
16462507 |
aaggtttgagaagttaatgccaacaccctgacaacacaaacaaacggaaaattgaattaattttagatcaaatgcgcgtctaatatccaacatgtgttaa |
16462408 |
T |
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| Q |
214 |
gtatctgacagttatgttttctttgattaatatcggtgtctacatatcagtgtctagtgtttgtgctt |
281 |
Q |
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| T |
16462407 |
gtatctgacagttatgttttctttgattaatatcggtgtctaaatatcagtgtctagtgtttgtgctt |
16462340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 279 - 430
Target Start/End: Complemental strand, 16462301 - 16462150
Alignment:
| Q |
279 |
cttttggcttggagatcaagaaacttactttataagattttccgtttccaaggacaacagttgactggaaattcctatcgatattagaggctgcaaccgt |
378 |
Q |
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| T |
16462301 |
cttttggcttggagatcaagaaacttactttataagcttttccgtttccaaggacaacagttgactggaaattcctatcgatattagaggctgcaaccgt |
16462202 |
T |
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| Q |
379 |
aaatatccatggtgctgtgttgacaacagtgtaatgatcaggaccatcattt |
430 |
Q |
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| T |
16462201 |
aaatatccatggtgctgtgttgacaacagtgtaatgatcaggaccttcattt |
16462150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 290 - 429
Target Start/End: Complemental strand, 16492196 - 16492057
Alignment:
| Q |
290 |
gagatcaagaaacttactttataagattttccgtttccaaggacaacagttgactggaaattcctatcgatattagaggctgcaaccgtaaatatccatg |
389 |
Q |
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||||||||||||||||||| || |||||| ||||||||||||| ||||||||| || |||||||| |||||||| |||||||| ||||||||||||| |
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| T |
16492196 |
gagatcaagaaacttacttggaaactttttccatttccaaggacaatagttgactgaaagttcctatcaatattagaagctgcaactgtaaatatccatg |
16492097 |
T |
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| Q |
390 |
gtgctgtgttgacaacagtgtaatgatcaggaccatcatt |
429 |
Q |
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| T |
16492096 |
gtgctgtgttgacaactgtgttaggatcaggaccatcatt |
16492057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 16492494 - 16492393
Alignment:
| Q |
67 |
gcagcaacgtcctctccaaaaacaagagaaaacatcgttgagcgagtaaggtttgagaagttaatgccaacaccctgacaagacaaacaaacggaaaatt |
166 |
Q |
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|||||||| ||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |
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| T |
16492494 |
gcagcaacttcctctccaaagacaagagaatgcatcgttgagcgtgtaaggtttgagaagttaatgccagcaccctgacaacacaaacaaagagaaaatt |
16492395 |
T |
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| Q |
167 |
ga |
168 |
Q |
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|| |
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| T |
16492394 |
ga |
16492393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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